Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00458 ATGAGTACGAAGAAGAATACATGGAAGTCTGTGGTCTTGATCTTAAGTTGTTACAAGGTTAAGTGCCCCTTGGAGGAATCAGAGAAACAAGTTTTGAAACAAGGTTCTTTCCAGAGGCTGTGTCTATCGGATGTAAGTAATTCAAGCTCCTCTCAGGCCATTGAAGATCTTTCAATTTCCCTGGCTGGTTCAAAACTTTTTGCATTCACACTTGAGGAGCTAAGGGAAGCAACAAATAATTTCTCATGGAGTAATATGCTAGGTGAAGGAGGGTTTGGACCTGTGTACAAGGGTTTTGTTGATGACAAACTTAGGCCTGGTTTGAAAGCTCAGACTGTAGCTGTCAAAAGGTTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAACTAAGGCATCCACATCTTGTCAAGTTAATTGGGTACTGTTATGAGGATGAACACCGGCTTTTGATGTATGAATACATGCCAAGAGGAAGCTTGGAGAATCAACTCTTCAGAAGATACTCTGCTGCCATGCCATGGTCAACTAGGATGAAAATTGCATTGGGAGCTGCCAAGGGTCTTGCTTTCCTTCATGAAGCAGATAAGCCTGTGATATACCGGGATTTCAAAGCTTCAAACATTTTACTAGACTCAGATTTCACCGCTAAACTCTCAGATTTTGGGCTAGCTAAGGATGGCCCTGAAGGGGAAGACACACATGTAACAACACGCATAATGGGAACACAAGGTTATGCTGCTCCTGAGTACATCATGACAGGTCACCTCACAACCAAAAGTGATGTGTATAGCTATGGAGTGGTGCTGTTGGAATTGCTGACAGGAAGAAGGGTAGTGGACAAGTCTCGGTCTAACGGAGGGAAGAGTTTGGTGGAATGGGCAAGGCCTTTGTTGAGAGATCAGAAGAAGGTGCATAGCATCATAGACCGTAGACTAGAAGGGCTATTTCCCATGAAAGGAGCCATGAAAGTTGCTATGTTAGCTTTTAAGTGCTTGAGTCATCACCCAAATCCAAGGCCAACTATGAGTGATGTGGTGAAGGTGTTAGAGCCACTTCAAGATTTTGATGATGTTTTCATTGGACCATTTGTGTATGTTGCCGTAAGTGAAAATGGTGACAAAGATAAAATATAG 1161 0.4324 MSTKKNTWKSVVLILSCYKVKCPLEESEKQVLKQGSFQRLCLSDVSNSSSSQAIEDLSISLAGSKLFAFTLEELREATNNFSWSNMLGEGGFGPVYKGFVDDKLRPGLKAQTVAVKRLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDEHRLLMYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDFTAKLSDFGLAKDGPEGEDTHVTTRIMGTQGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSRSNGGKSLVEWARPLLRDQKKVHSIIDRRLEGLFPMKGAMKVAMLAFKCLSHHPNPRPTMSDVVKVLEPLQDFDDVFIGPFVYVAVSENGDKDKI 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00458 386 Gene3D Transferase(Phosphotransferase) domain 1 164 368 - -
Cca05g00458 386 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Cca05g00458 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Cca05g00458 386 Gene3D Phosphorylase Kinase; domain 1 42 163 - -
Cca05g00458 386 PANTHER KINASE 1B 21 383 - -
Cca05g00458 386 CDD STKc_IRAK 87 361 - -
Cca05g00458 386 PANTHER OS01G0588500 PROTEIN-RELATED 21 383 - -
Cca05g00458 386 SUPERFAMILY Protein kinase-like (PK-like) 58 359 IPR011009 -
Cca05g00458 386 ProSiteProfiles Protein kinase domain profile. 81 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00458 Cca-Chr5 10030842 10033755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00458 69 358 Glycoside Hydrolase AT3G07070 53.242 2.13e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca05g00458 PK_Tyr_Ser-Thr 8.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00458 - - gmx:100802636 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00458 05 10030842 10033755 Cca05g00458 05 10030842 10033755 ECH
Cca11g02542 11 52575787 52578281 Cca05g00458 05 10030842 10033755 ECH
Cca11g00408 11 5576321 5578594 Cca05g00458 05 10030842 10033755 ECH