Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00456 ATGATGCACATGACTTTTTATTGGGGCAAAAAGGTTACCATCTTAATCGATTCATGGAAGACCAATTCCTGGACGAGTTACGTTCTGAGTCTACTCGCCTGCCTCGTCGTCGCCGCCTTCTACCAGTACCTGGAGAATCGCCGGATCCGCCTGAAGCTCTTCGCCGCTGGGAGGAGAACGCCGTCGCCGGAGATCCGCACTCCTCTTCTGCGGTGGCGCGTGGCCGGCGACGAGGCGAAGTTGGGGGTTAAGTTCGCGGAAGCGGTTCTGTTCGGAGTGAACTCGGCGATCGGGTATTTGTTGATGTTGGCGATTATGTCCTTCAATGGAGGGGTGTTTGTGGCAATTGTGGTGGGTCTCACGCTAGGGTATTTTTTGTTTAGGAATGAGGGGGAGGATTCTGCGCTTGTTGTTGATAATTCTTGTGCTTGTTCTTAG 438 0.5297 MMHMTFYWGKKVTILIDSWKTNSWTSYVLSLLACLVVAAFYQYLENRRIRLKLFAAGRRTPSPEIRTPLLRWRVAGDEAKLGVKFAEAVLFGVNSAIGYLLMLAIMSFNGGVFVAIVVGLTLGYFLFRNEGEDSALVVDNSCACS 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00456 145 Pfam Ctr copper transporter family 4 127 IPR007274 GO:0005375|GO:0016021|GO:0035434
Cca05g00456 145 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 1 145 IPR007274 GO:0005375|GO:0016021|GO:0035434
Cca05g00456 145 PANTHER CTR FAMILY COPPER TRANSPORTER 1 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00456 Cca-Chr5 9998276 9999204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00456 1 145 Inorganic Solute Cotransporters AT5G20650 54.667 8.43e-56 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00456 K14686 - gmx:100801036 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00456 05 9998276 9999204 Cca05g00456 05 9998276 9999204 ECH
Cca03g01667 03 35790001 35790420 Cca05g00456 05 9998276 9999204 ECH
Cca11g02548 11 52631772 52632595 Cca05g00456 05 9998276 9999204 ECH
Cca11g00417 11 5725557 5727845 Cca05g00456 05 9998276 9999204 ECH