Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00453 ATGGTGAAACCTGGTGCTGGTGTTGATCATTCTTCTAGTGatcactcatcgtcatcaccatcatcatGTTCCACtaatagcaacaataataatagtaggaatagtagtaatTGCAAGATGTACAAAGGTGTGAGGAAGAGAAAATGGGGCAAATGGGTTTCCGAAATTAGGCTTCCCAATAGCCGTGAGAGAATATGGTTGGGCTCTTACGACACCCAAGAGAAAGCTGCTAGGGCCTTCGACGCTGCGCTTTACTGCCTACGTGGCAAAAACGCCGCTTTCAATTTCCCCGACACACCTCAAACGTTTGAGGACACCAATGTGGTCGTCGTGTCTCACCATTCTCGTCTTTCCCCACAAGAGATTCAAGAGGTTGCTGCCAAGTTCGCAAACAACGTTAACGATGACCCTCCTCAAGATCAAGAACCGTCGTTGGATTTGGAGTCACAACGAAGTGAGAGCACCTTGTTCAATAACAGTGTTTGTGAGCAAGTGGACCAAGTCCAAGGGGAATGGGACACCACGTTTTGGAACATGTTGGATGACTTGAATGGTGGGTTCTTGTGCCCCACACAAGCTCCACTGCTTTTTCAGGATCAAATTCAAGGtgatgattatggttattatgatcatgatgCTTTTTCTAACCATTCATTCCTTTGGAGTTGGAACTTTTGA 678 0.41 MVKPGAGVDHSSSDHSSSSPSSCSTNSNNNNSRNSSNCKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGKNAAFNFPDTPQTFEDTNVVVVSHHSRLSPQEIQEVAAKFANNVNDDPPQDQEPSLDLESQRSESTLFNNSVCEQVDQVQGEWDTTFWNMLDDLNGGFLCPTQAPLLFQDQIQGDDYGYYDHDAFSNHSFLWSWNF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00453 225 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Cca05g00453 225 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Cca05g00453 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 225 - -
Cca05g00453 225 Pfam AP2 domain 41 89 IPR001471 GO:0003700|GO:0006355
Cca05g00453 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 21 225 - -
Cca05g00453 225 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Cca05g00453 225 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Cca05g00453 225 MobiDBLite consensus disorder prediction 10 39 - -
Cca05g00453 225 MobiDBLite consensus disorder prediction 1 39 - -
Cca05g00453 225 CDD AP2 41 99 IPR001471 GO:0003700|GO:0006355
Cca05g00453 225 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Cca05g00453 225 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00453 Cca-Chr5 9881595 9882520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00453 34 136 AP2-EREBP Transcription Factor Family AT1G19210 69.903 7.15e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca05g00453 AP2 5.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00453 - - gmx:102665533 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00453 05 9881595 9882520 Cca05g00453 05 9881595 9882520 ECH
Cca03g01657 03 35663915 35664355 Cca05g00453 05 9881595 9882520 ECH