Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca05g00450 | ATGGATTCAGAGGATTTGTTGAAACAAGAATTGGAGGAATTGCAGAAACAATTGGGGAAGAAGCAGCAGTTTGAAGCCGCTGTTTCGTCCCTCAAATCCCTTCTCCAACCCATATACCCATCAGCTTCTCCTTCGCTTCGCAAATCCTTTTATTCGGTTATATGCCGAGTTGCTACGGTGTTGAGGACCAGGTATACAGCGCCAGGTTTCTGGAATGCTGGAATGGACCTTTTTGAGCAGGCTCATTTGCTTGTTTCTGAACCTTCTGAGAAGGAGCACTTGAAGGCTTGTATTGCTCTGGCCAGAGAACACTTGCATCTAGAAGACGACCCATCACAAGCTTCACAACCTGCAGATAATCAGGCAAACAGAGGATATCTTTTTGAGGGGCACCTTACGGTTGATCCTGAACCACCACAGCCTCAATGGTTGGCTCAGTCAAACCTCTTGACAGCAGCTGCTACACTCTTCGCTGCTGAATCCTCTCAAGCTTCAGCAGCAAATGATACCACTCAAGAGGATGCCGCAAATATGCTTCAAGATCTTATAAATAGATTGGAAGAAGTTGTGCCGTTGATGGTGGATGGAGGTGGTACTGTAGCTCCAAGAGTTCCTCCTGCTAGTAAAGAGGTTGTGGCAAAACTTCCGGTCATTACTCTCACAGAGGAAATCCTGGCTAATTTGGGTAAAGATGCTGAGTGTGCTATTTGCAGGGAGAACTTGGTTTTAAATGACAAAATGCAAGAGTTACCATGCAAGCACACATTCCACCCACCGTGTCTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCCATCTGTCGATATGAGCTGCAAACTGATGATCATGCCTATGAGAGCTGGAAGGAGCGTGAAAAGGAAGCTGAAGAAGAGAGGAAAGGTGCTGAAAATGCCATTCGAGGTGGTGAATACATGTATGTTTAA | 945 | 0.4593 | MDSEDLLKQELEELQKQLGKKQQFEAAVSSLKSLLQPIYPSASPSLRKSFYSVICRVATVLRTRYTAPGFWNAGMDLFEQAHLLVSEPSEKEHLKACIALAREHLHLEDDPSQASQPADNQANRGYLFEGHLTVDPEPPQPQWLAQSNLLTAAATLFAAESSQASAANDTTQEDAANMLQDLINRLEEVVPLMVDGGGTVAPRVPPASKEVVAKLPVITLTEEILANLGKDAECAICRENLVLNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAIRGGEYMYV | 314 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca05g00450 | 314 | ProSiteProfiles | Zinc finger RING-type profile. | 234 | 275 | IPR001841 | - | |
Cca05g00450 | 314 | PANTHER | ABI3-INTERACTING PROTEIN 2-1 | 10 | 308 | - | - | |
Cca05g00450 | 314 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 10 | 308 | - | - | |
Cca05g00450 | 314 | Coils | Coil | 4 | 27 | - | - | |
Cca05g00450 | 314 | Pfam | Ring finger domain | 233 | 275 | IPR001841 | - | |
Cca05g00450 | 314 | Coils | Coil | 285 | 305 | - | - | |
Cca05g00450 | 314 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 281 | IPR013083 | - | |
Cca05g00450 | 314 | SMART | ring_2 | 234 | 274 | IPR001841 | - | |
Cca05g00450 | 314 | SUPERFAMILY | RING/U-box | 228 | 281 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca05g00450 | Cca-Chr5 | 9772304 | 9775330 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca05g00450 | 7 | 314 | C3H Transcription Factor Family | AT5G20910 | 64.401 | 1.61e-134 | 382 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca05g00450 | K16274 | - | gmx:100800189 | 527.324 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca05g00450 | 05 | 9772304 | 9775330 | Cca05g00450 | 05 | 9772304 | 9775330 | ECH |