Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00450 ATGGATTCAGAGGATTTGTTGAAACAAGAATTGGAGGAATTGCAGAAACAATTGGGGAAGAAGCAGCAGTTTGAAGCCGCTGTTTCGTCCCTCAAATCCCTTCTCCAACCCATATACCCATCAGCTTCTCCTTCGCTTCGCAAATCCTTTTATTCGGTTATATGCCGAGTTGCTACGGTGTTGAGGACCAGGTATACAGCGCCAGGTTTCTGGAATGCTGGAATGGACCTTTTTGAGCAGGCTCATTTGCTTGTTTCTGAACCTTCTGAGAAGGAGCACTTGAAGGCTTGTATTGCTCTGGCCAGAGAACACTTGCATCTAGAAGACGACCCATCACAAGCTTCACAACCTGCAGATAATCAGGCAAACAGAGGATATCTTTTTGAGGGGCACCTTACGGTTGATCCTGAACCACCACAGCCTCAATGGTTGGCTCAGTCAAACCTCTTGACAGCAGCTGCTACACTCTTCGCTGCTGAATCCTCTCAAGCTTCAGCAGCAAATGATACCACTCAAGAGGATGCCGCAAATATGCTTCAAGATCTTATAAATAGATTGGAAGAAGTTGTGCCGTTGATGGTGGATGGAGGTGGTACTGTAGCTCCAAGAGTTCCTCCTGCTAGTAAAGAGGTTGTGGCAAAACTTCCGGTCATTACTCTCACAGAGGAAATCCTGGCTAATTTGGGTAAAGATGCTGAGTGTGCTATTTGCAGGGAGAACTTGGTTTTAAATGACAAAATGCAAGAGTTACCATGCAAGCACACATTCCACCCACCGTGTCTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCCATCTGTCGATATGAGCTGCAAACTGATGATCATGCCTATGAGAGCTGGAAGGAGCGTGAAAAGGAAGCTGAAGAAGAGAGGAAAGGTGCTGAAAATGCCATTCGAGGTGGTGAATACATGTATGTTTAA 945 0.4593 MDSEDLLKQELEELQKQLGKKQQFEAAVSSLKSLLQPIYPSASPSLRKSFYSVICRVATVLRTRYTAPGFWNAGMDLFEQAHLLVSEPSEKEHLKACIALAREHLHLEDDPSQASQPADNQANRGYLFEGHLTVDPEPPQPQWLAQSNLLTAAATLFAAESSQASAANDTTQEDAANMLQDLINRLEEVVPLMVDGGGTVAPRVPPASKEVVAKLPVITLTEEILANLGKDAECAICRENLVLNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAIRGGEYMYV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00450 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Cca05g00450 314 PANTHER ABI3-INTERACTING PROTEIN 2-1 10 308 - -
Cca05g00450 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 308 - -
Cca05g00450 314 Coils Coil 4 27 - -
Cca05g00450 314 Pfam Ring finger domain 233 275 IPR001841 -
Cca05g00450 314 Coils Coil 285 305 - -
Cca05g00450 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 281 IPR013083 -
Cca05g00450 314 SMART ring_2 234 274 IPR001841 -
Cca05g00450 314 SUPERFAMILY RING/U-box 228 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00450 Cca-Chr5 9772304 9775330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00450 7 314 C3H Transcription Factor Family AT5G20910 64.401 1.61e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00450 K16274 - gmx:100800189 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00450 05 9772304 9775330 Cca05g00450 05 9772304 9775330 ECH