Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00446 ATGGTTTGTGAGATGGAGAGTGAGTGTATTGAGGACATGGACATCGAAGTCCTCTCTTCAATGTGGCCTGAAGATATTGGCACTGATGTTGGAAAACAGTTCAATATAGAGAAGCCTGGAATGGACCAAGACATGTTGGAGGAAGTCACAATCTTAGAGGAGCCAACTATAGCTGATTTCCAGCGTCTCATGGAGCTTACCAATTACACAGATAAAGGTTCTTCTCAGTTGGCATATCTCATGAAACACTGGGAGTATAAGCAGGCTAATGCAGTTCGGCTTCTCAGAGAGGAACTTGACAACCTTAGCAAGCAAAGGCAGGAAGTTGAGCTCAGGAAGTTGGAGATACTCAAAGATAATCGATTTGAGGAAGAGAATTACGGTGGTGACAAACGTCCAGTTTCCATTTTGGATGAAGTTTACTATACATGGCAAGATTTGCCAGTGCCACTCAGGAAGAGTGATGTGATTGTGCAAAATAAGAGGATTGAAATTGATGCTGAGTTTGACACTGTTGTGTATTGGAAACAGCGGGCGATGCAGTTGGAAAGACAATTGGAGGCAAGTGTCCAGAGAGAGCAGATACTAATGGACAAGTTACAAGAAAGTATAAAGAATCTAGAAAGGCAGTCCTCACCTGTGGAAGAACTATCCCAGATTCTGAAGAGAGCAGATAATTTCTTACATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGCTTTATCTACAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACAGATGTTGAAATTTTCACAGGATCTGGTGTTAAGGAATCTCAAGATTTCAAGAGGGAAGTAATGGAGAAAGGGTTGCCTGCAAAAAAGGAAATTACTTTTGAGACAGAATTATTTGGATCAAAGACATTCTTGATATATGTAGAACCTGTCTTTAGCAAAGCAGGAGAAACAATTGGAATAAACTATATGGGAATGGAAATAACAGATCAGGTAAGAAAAAGAGAAAGAATGGCAAAGCTTAGGGAAGAGATTGCTGTCCAGAAAGCCAAGGAAACAGAACTTAATAAGACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCCACCACAAAACTAGATCGGGAGCAAAGGCAACTCTTGGGTGTTATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCAACCAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTGCTCCAGACAGCTGCAGCATCATTGCAGAAAATGTTAACCTTGGAAGGAAATGTGGCAGATGATATACCTGTTGAGGTCATTGGAGATGTTTTGAGGATTCGGCAGATTCTCACAAATTTAGTCAGCAATGCGGTAAAGTTTACACATCACGGCAAAGTTGGTATAAATCTTTACGTTGTTCCAGAACCACCTTTTGCCAAAGAAGAAGGCCATCAAAAGATGAGCACAGAGCAGTCAACAAATTCAGCAAATGGGGTGAAGGAAGAGAAACGTGCGTCAACACCACGAAGCAGCAGTGATCAAAATTGTCTTGATGGTCGGAAACACAAAGACCATCCTAGCCAAAACCATGCATTCAACGATGAATGTAGATCTTCAGTTAAAAGTGAATGCTCAATGAATGGAGATACTGAGGAGCAAACTCATTCCACTGAAACAACAGTGTGGATACGCTGTGACGTATACGACACAGGAATTGGAATACCAGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTTAGTGCCGACCATGCTCGAAAGTATGGGGGCACAGGACTGGGACTAGCAATTTGCAAACAACTGGTTGAGTTGATGGGGGGTCATCTAACAGTGGCTAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTTCCATACAAGGTTTCAACAGCTTGTGACAACTCTGATGACCCAGATGAGCTCTCAGATGTGGATGATACTGATGATGATACCACAGAGGGGTTCTTCCAATTCCAACCACGCACTTTGGGTTCTCTCTTCTCTTCTAATGGACCTACAAGGCCCCAAAATATACTACCAGGTTTTAGGAGCTCAAATAAGTTCAATGGCTTTTCAGAGAATTCTTACTCATTCCCCACTACCAACATAAAATCAAAGGGGACTAGTTCAACCGAGGATGCATCTTCAGTTATTGTTGATGCTTCAGAGATGTCTGAATCAACAAGTTCATCGAGTCACATCCCAGAAACAAAGCATGAAAGTTTGGTTAACACAAACAAACAGAATGAAGATAAGGCACATGCTCGGTTACAGAATGGTAGCTTAGACTCTTCTCAACATAAGGAGGGAATGACTCTAGGAACAATGTCAAGTGAACCCCAACAAACATGTCACCAAGTGAAGACAGACTTAACCTCCCAATGGGTTAGCAGTACTAATAATAATGACACATCATCAGAAGTGACCAAATCTGCATTAAAGCCTAAGATTCTTCTTGTTGAAGATAACAAGATCAATGTCATGGTTACACAGTCAATGATGAAGAGGTTAGGCTATAGCATGGATGTTGTGCATAATGGAGTGGAAGCAGTACGTGCAGTTCAGCGCCATTCTTATGATGTCATTTTGATGGATGTTTACATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTCGGTCTTATGAGGAAACGGGCAATTGGGAAGCTGCAAGTAAAGCTGGAATTGAACCATGTTTACCAACTTCACATGAATGTTCTGTACTACCTAAAAACCGGATCCACATCATTGCGATGACAGCAAACACATTGTCAGAGAGTGCTGAGGAATGTTATGCAACTGGTATGGACTCGTTTGTGTCAAAACCTGTGACATTCCAAAAATTGAAAGATTGTCTAGAACAGTACCTGAGGTGA 3039 0.411 MVCEMESECIEDMDIEVLSSMWPEDIGTDVGKQFNIEKPGMDQDMLEEVTILEEPTIADFQRLMELTNYTDKGSSQLAYLMKHWEYKQANAVRLLREELDNLSKQRQEVELRKLEILKDNRFEEENYGGDKRPVSILDEVYYTWQDLPVPLRKSDVIVQNKRIEIDAEFDTVVYWKQRAMQLERQLEASVQREQILMDKLQESIKNLERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPVEVIGDVLRIRQILTNLVSNAVKFTHHGKVGINLYVVPEPPFAKEEGHQKMSTEQSTNSANGVKEEKRASTPRSSSDQNCLDGRKHKDHPSQNHAFNDECRSSVKSECSMNGDTEEQTHSTETTVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGHLTVASKEHCGSTFTFILPYKVSTACDNSDDPDELSDVDDTDDDTTEGFFQFQPRTLGSLFSSNGPTRPQNILPGFRSSNKFNGFSENSYSFPTTNIKSKGTSSTEDASSVIVDASEMSESTSSSSHIPETKHESLVNTNKQNEDKAHARLQNGSLDSSQHKEGMTLGTMSSEPQQTCHQVKTDLTSQWVSSTNNNDTSSEVTKSALKPKILLVEDNKINVMVTQSMMKRLGYSMDVVHNGVEAVRAVQRHSYDVILMDVYMPVMNGLQTTKLIRSYEETGNWEAASKAGIEPCLPTSHECSVLPKNRIHIIAMTANTLSESAEECYATGMDSFVSKPVTFQKLKDCLEQYLR 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00446 1012 MobiDBLite consensus disorder prediction 809 833 - -
Cca05g00446 1012 SUPERFAMILY CheY-like 868 1012 IPR011006 -
Cca05g00446 1012 Coils Coil 92 119 - -
Cca05g00446 1012 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 427 680 IPR036890 -
Cca05g00446 1012 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 484 679 IPR003594 -
Cca05g00446 1012 Gene3D - 862 1012 - -
Cca05g00446 1012 MobiDBLite consensus disorder prediction 524 579 - -
Cca05g00446 1012 SMART REC_2 868 1007 IPR001789 GO:0000160
Cca05g00446 1012 MobiDBLite consensus disorder prediction 718 737 - -
Cca05g00446 1012 CDD HisKA 372 434 IPR003661 GO:0000155|GO:0007165
Cca05g00446 1012 Gene3D - 361 438 - -
Cca05g00446 1012 Gene3D - 439 685 IPR036890 -
Cca05g00446 1012 ProSiteProfiles Response regulatory domain profile. 869 1011 IPR001789 GO:0000160
Cca05g00446 1012 PRINTS Bacterial sensor protein C-terminal signature 606 620 IPR004358 GO:0016310|GO:0016772
Cca05g00446 1012 PRINTS Bacterial sensor protein C-terminal signature 641 659 IPR004358 GO:0016310|GO:0016772
Cca05g00446 1012 PRINTS Bacterial sensor protein C-terminal signature 665 678 IPR004358 GO:0016310|GO:0016772
Cca05g00446 1012 Coils Coil 183 217 - -
Cca05g00446 1012 Gene3D PAS domain 214 350 - -
Cca05g00446 1012 ProSiteProfiles Histidine kinase domain profile. 380 681 IPR005467 -
Cca05g00446 1012 CDD REC_hyHK_CKI1_RcsC-like 870 1007 - -
Cca05g00446 1012 MobiDBLite consensus disorder prediction 775 795 - -
Cca05g00446 1012 CDD HATPase_EvgS-ArcB-TorS-like 489 678 - -
Cca05g00446 1012 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 1011 - -
Cca05g00446 1012 SMART HisKA_10 373 438 IPR003661 GO:0000155|GO:0007165
Cca05g00446 1012 Pfam Response regulator receiver domain 870 938 IPR001789 GO:0000160
Cca05g00446 1012 MobiDBLite consensus disorder prediction 775 796 - -
Cca05g00446 1012 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 372 438 IPR036097 GO:0000155|GO:0007165
Cca05g00446 1012 Pfam His Kinase A (phospho-acceptor) domain 375 438 IPR003661 GO:0000155|GO:0007165
Cca05g00446 1012 SMART HKATPase_4 484 681 IPR003594 -
Cca05g00446 1012 MobiDBLite consensus disorder prediction 558 574 - -
Cca05g00446 1012 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 1011 - -
Cca05g00446 1012 Coils Coil 344 364 - -
Cca05g00446 1012 MobiDBLite consensus disorder prediction 811 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00446 Cca-Chr5 9726062 9732962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00446 1 1011 Histidine Kinase Gene Family AT5G10720 58.333 0.0 1118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca05g00446 HATPase_c 8e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00446 - - gmx:100796072 1815.05