Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00444 ATGATAACTTGGAACCTTTTGCACGCAAGAATAAGCTGTACACACGCAATAGCTCTATTATTTCTTCATTTTTTGTTATTGGTCAAACAAGCTGTACCTGGGAACCCTGAATATTCAAGCTGTGATATGGGGTACCTCAATTCAGTTTTGTCCTCTTCAAGCCAGGTTCATGCTGCAGAAGATTCACCTGTCAGCGGAGGGGGCCTCAGTCAGAATGGAAAATTCAGCTATGGCTATGCTAGCTCCCCTGGCAAGAGATCATCAATGGAAGATTTTTATGAGACGAAAATTGATGGTGTTGATGGTGAAATTGTTGGCCTATTTGGAGTATTTGATGGCCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACTTATTTAGCAATTTGATCAGCCATCCAAAATTCATTTCTGACACCAAATCTGCAATAGCTGATGCCTATAGCCATACCGACTCTGAATTTCTGAAATCTGAAAATACTCAAAACAGAGATGCTGGATCAACTGCTTCCACCGCCATTCTTGTTGGTGACCGTTTGCTTGTTGCAAATGTTGGGGATTCCAGAGCTGTTATATGCAGGGGTGGAAATGCCATTGCTGTTTCTCGAGATCACAAGCCAGACCAAACTGATGAGAGGCAAAGGATTGAAGATGCAGGTGGATTTGTTATGTGGGCTGGAACTTGGAGAGTTGGGGGTGTTCTTGCTGTTTCTCGTGCATTTGGTGATAGACTCTTGAAGCAATATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGATTGATAGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGACTATGGGATGTTGTCTCGAATGAGGAAGCTGTTGCTATGATCAAACAAATTGAGGACGCCGAGGAGGCAGCAAAGAGACTGATGCAAGAAGCATATCAGAGAGGTAGTTCTGACAACATTACATGTGTTGTGGTTCGTTTCTTGACAAACCAAGGTGCTTCTTCTCATAATAACTCTGGCTAA 1008 0.4296 MITWNLLHARISCTHAIALLFLHFLLLVKQAVPGNPEYSSCDMGYLNSVLSSSSQVHAAEDSPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETKIDGVDGEIVGLFGVFDGHGGARAAEYVKQNLFSNLISHPKFISDTKSAIADAYSHTDSEFLKSENTQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVSNEEAVAMIKQIEDAEEAAKRLMQEAYQRGSSDNITCVVVRFLTNQGASSHNNSG 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00444 335 SMART PP2C_SIG_2 71 322 IPR001932 -
Cca05g00444 335 SMART PP2C_4 66 320 IPR001932 -
Cca05g00444 335 Coils Coil 285 309 - -
Cca05g00444 335 PANTHER ALPHABET, ISOFORM E-RELATED 45 331 - -
Cca05g00444 335 CDD PP2Cc 75 322 IPR001932 -
Cca05g00444 335 ProSitePatterns PPM-type phosphatase domain signature. 107 115 IPR000222 GO:0043169
Cca05g00444 335 Gene3D - 68 328 IPR036457 -
Cca05g00444 335 ProSiteProfiles PPM-type phosphatase domain profile. 76 322 IPR001932 -
Cca05g00444 335 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 45 331 - -
Cca05g00444 335 SUPERFAMILY PP2C-like 70 322 IPR036457 -
Cca05g00444 335 Pfam Protein phosphatase 2C 105 315 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00444 Cca-Chr5 9665070 9671086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00444 43 332 PP2C-type Phosphatase Gene Family AT4G31750 90.136 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00444 K17506 - gmx:100795017 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00444 05 9665070 9671086 Cca05g00444 05 9665070 9671086 ECH