Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00440 ATGGAGGAGAGAAAGAAATTTTCTGTAGAAAACTCGTCTAAATTCAAGGCCTTAGCCGAGGAGGCCCGAAAGGAGAGCTTTTGGTATGGAGAAGATCGACCTCGTTGGCTTGGTCCTATTTCATATGAATACCCATCATATCTTACTGGTGAACTTCCTGGGGATTACGGCTTTGACATCACCGGGCTTGGCAAGGATCCTGTGGTACTGCAGAAATACTTCAACTTTGAGATATTGCATGCTCGGTGGGCCATGCTTGCATCTGTCGGTGCTCTTATTCCTGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTAGAACCTGTGTGGTGGCGTGTTGGTTATTCAAAGCTCAAGGGAGATACTCTAGATTACCTTGGCATCCCAGGTCTTCACTTTGCTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGGTTGGACCGGAATACGCCAGATATTGTGGGACTGAGGCATTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAATTATCCTGGAGGAGCTTTGTTTGATCCCTTGAGTCTGTCCAACGATCCTGAAGCTTTTGAAGAGCTGAAGGTAAAAGAAATAAAAAATGGACGCTTGGCAATGGTTGCCTGGTTAGGCTTTTACTTGCAAGCAGCAGTGACGGGTAAAGGTCCTGTACAGAACCTTATTGATCACATCTCCGATCCTTTCCACAACAACTTGCTGGACTCCCTCAACTTCATGAAGGTAGTCAACTGA 765 0.4575 MEERKKFSVENSSKFKALAEEARKESFWYGEDRPRWLGPISYEYPSYLTGELPGDYGFDITGLGKDPVVLQKYFNFEILHARWAMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHFAGSQGVVVIAICQALLMVGPEYARYCGTEALEPLGIYLPGDINYPGGALFDPLSLSNDPEAFEELKVKEIKNGRLAMVAWLGFYLQAAVTGKGPVQNLIDHISDPFHNNLLDSLNFMKVVN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00440 254 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 7, CHLOROPLASTIC 1 243 - -
Cca05g00440 254 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 243 IPR001344 GO:0009765|GO:0016020
Cca05g00440 254 Pfam Chlorophyll A-B binding protein 45 220 IPR022796 -
Cca05g00440 254 SUPERFAMILY Chlorophyll a-b binding protein 27 246 - -
Cca05g00440 254 Gene3D Chlorophyll a/b binding protein domain 35 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00440 Cca-Chr5 9605745 9615235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00440 1 248 Chloroplast and Mitochondria Gene Families AT1G76570 79.435 3.72e-152 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00440 K14172 - gmx:100786260 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00440 05 9605745 9615235 Cca05g00440 05 9605745 9615235 ECH