Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00438 ATGCTCTCTCGCGGTCCCCATGTCGTGAGGTTACTGAATGTAAGTCAAGGTCTCAACAAGGAAGGCAAGACAGTGCTCTACTTGGTATTCGAGTATATGGACACTGATCTCAAGAAATATATCCGTTCTTTCCGTCAAGCTGGAGAGAACATTCCACCTCAAACCGTCAAAATTTCTCTGTATATATTCAATATTCGCTTTCTTAAATCAATTTTGTTACATAGCTTGATGTACCAACTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGAATCTTGCACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCCAAAAACAATGATGCTCAAAATAGCAGATCTTGGACTCGCTCGAGCATTCACTGTACCTATTAAGAAATACACACATGAGATACTAACACTTTGGTATAGAGCCCCTGAAGTCCTCCTGGGAGCTACCCATTACTCAATGGCTGTGGACATGTGGTCCGTTGCCTGCATATTTGCCGAACTTGTCACTAAACAAGCACGCTTTCCTGGTGATTCAGAGCTGCAACAACTCCTTCATATATTCAGGCTATTGGGCACTCCTAATGAAGAGATGTGGCCAGGCGTGAGTAAACTAATGAACTGGTATGAATACCCCCAATGGAACCCTCAAAATCTGTCAACGGCTGTTCCAAATTTGGATGAGCTTGGCCTGGATCTGCTATCTCAAATGTTGAAGTATGAACCTTCCAAGAGGATTTCTGCAAAGAAAGCTATGGAACATCCTTACTTTGGTGATCTGGACAAAAGTCTCCTTTAG 792 0.4356 MLSRGPHVVRLLNVSQGLNKEGKTVLYLVFEYMDTDLKKYIRSFRQAGENIPPQTVKISLYIFNIRFLKSILLHSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDPKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSMAVDMWSVACIFAELVTKQARFPGDSELQQLLHIFRLLGTPNEEMWPGVSKLMNWYEYPQWNPQNLSTAVPNLDELGLDLLSQMLKYEPSKRISAKKAMEHPYFGDLDKSLL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00438 263 PANTHER - 9 261 - -
Cca05g00438 263 SMART serkin_6 1 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00438 263 Gene3D Phosphorylase Kinase; domain 1 1 48 - -
Cca05g00438 263 Pfam Protein kinase domain 5 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00438 263 ProSitePatterns Serine/Threonine protein kinases active-site signature. 92 104 IPR008271 GO:0004672|GO:0006468
Cca05g00438 263 ProSiteProfiles Protein kinase domain profile. 1 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00438 263 PANTHER CELL DIVISION PROTEIN KINASE 9 261 - -
Cca05g00438 263 SUPERFAMILY Protein kinase-like (PK-like) 4 258 IPR011009 -
Cca05g00438 263 Gene3D Transferase(Phosphotransferase) domain 1 66 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00438 Cca-Chr5 9584183 9585499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00438 1 258 Core Cell Cycle Gene Families AT1G76540 78.682 7.51e-154 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Cca05g00438 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00438 K07760 - gmx:547738 455.677