Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00436 ATGCCGGCGAGGAAGTTTTACTGCGATTACTGCGACAAGCAATTCCAAGACACACCAGCTGATCGGAAACGACACGTTAAGGGCATTCTCCATCAGCAAGCCAAAGCTCGTTGGTACGATTCCTTCAAACAAATCCCTAATCCTAATCCACCCCTCTGCTTTCACTTGCTCAACACGGGATTTTGCCGTCACGGCGAGTCTTGCAAGTATCTTCATCCCACCAAGTCCCCAATCGAAACCACTCCCTCTCCGGGGAATGTGTTGAATCTGCCTCCGTCGCTCCAACCCCCTCCTCAGGGTGGATATCCCCACCTTCCCTTTCTTGACTGGGGATAG 336 0.5208 MPARKFYCDYCDKQFQDTPADRKRHVKGILHQQAKARWYDSFKQIPNPNPPLCFHLLNTGFCRHGESCKYLHPTKSPIETTPSPGNVLNLPPSLQPPPQGGYPHLPFLDWG 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00436 111 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Cca05g00436 111 MobiDBLite consensus disorder prediction 89 103 - -
Cca05g00436 111 SUPERFAMILY CCCH zinc finger 47 75 IPR036855 GO:0046872
Cca05g00436 111 Gene3D - 44 93 - -
Cca05g00436 111 PANTHER NUCLEASE-RELATED 1 111 - -
Cca05g00436 111 SUPERFAMILY beta-beta-alpha zinc fingers 4 44 IPR036236 -
Cca05g00436 111 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 73 IPR000571 GO:0046872
Cca05g00436 111 Pfam U1 zinc finger 5 39 IPR013085 GO:0008270
Cca05g00436 111 Gene3D Classic Zinc Finger 3 43 - -
Cca05g00436 111 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Cca05g00436 111 MobiDBLite consensus disorder prediction 75 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00436 Cca-Chr5 9562919 9563631 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca05g00436 zf-U1 3.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00436 K13152 - gmx:100527203 170.629