Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00429 ATGTCGGAGAAGTTCCTGACCGTGCCGCCATTTGAGTGCGCATGGAGAGAGGATTTGAAATTCCGGGAAGCTGGTAGAGGTTGTGTGGCCTTCGAAGCATTCGCCTGCAACGATGTTACACTGGTTTTCCGTGAGAATGTGGGAAGCCAGGGTTACCATTATAAAAGAGATAGCAGTCCTCACTACACAATCATATTGGGGAGTCACAGGAATCGAAGACTCAGAATTGAGGTCAATGGAAAAACTGTTGTCGACGTGGCAGGGGTTGGTCTTTGCTGCTCTTCCTCCTTTCAGAGTTATTGGATCAGCATCTACGATGGCTTGATTAGCATAGGCAATGGGAAGTACCCTTTTCAGGATGTTGTTTTCCAGTGGTTGGATTCTTATCCCAATTGCAATGTTCAGTATATTGGCCTCAGCAGCTGGGATAAACATGTTAAGTATAGAAATGTTAATGTTTTGTCCATGACCCACACTCATGTGCCCCTCTGGAAGCATGTTGTTTTCGGTGATTATCAAGTTGAGGATGAAATTGATGCAGCAGACTGTTACGATTACAAGCATATGGATTATGATAAATGGGGGCTCAAAAATTTCCTCGAGAGTTGGGACTTGTCTGATGTGTTGTTCATTGTTGGAGAAGATGAAAAGCCCGTTCCTGCCCACAAGGCGATTTTAGCTGCATCTGGGAACTTTTCTCTGTGCTCTTCCTCCTTTGTCATCAAAGTACCCACAGTGTCTTATCCACTTTTCCATGCACTGCTTCACTATATCTACACTGGCTGGACCCAGATTCCTCCGGAACAACTTGGTTCTTTGAGGGCTTTAAGTCTGCAGTTTGAAGTGATGCCACTGGTGAAGCAGTGTGAAGAGACTATGGAGCGGTTTAAGCTAGATAAGAAGTTGTTGATGGGTGAGAATGTGGAGTTAACATATCCTTCTATCCGCCCTCATTGTTCAACTTTGCCCTCACTTCCTGTCAGCATTCAGCAACTGAGACAATTGAAATTAACAAGCCAGTACGGTGATGTAAACATCTACATCGAAAGTTATGGTCTCATTGCACGAGCACATAAAATTGTTCTCAGCTTATGGAGTATCCCCTTTGCTCGGATGTTCACAAATGGAATGAGTGAAAGCATGTCCTCGGAGGTTACTTTAAGGGATGTGCCACCAGAAGCATTCATGGCTATGCTTGACTTTTTATATGATGGGCAATTGAATGACAAAGTTTTAGATTCTGGTGCCTTGTTGCTCCAACTCCTTTTATTAGCCGATCAATTTGGAGTGACTTTTCTTCAACAAGAATGCTGCAAAATGCTTTTAGAATGTCTCTCAGAGGACTCAGTATGTCCACTCCTCCAAGTGGTTTCTTCAATCCCATCATGTAGACTTGTTAAAGAAACACTGCAGAGGAGAATTTCCATGAACTTCGACTATTATATCAGTGCAAGTACTGACTTTGTTTTGTTAGACGAGACGACCTTCATCAATATCATTAAGCATCCAGATCTGACAGTAACATCTGAAGAGAAAGTTCTTAATGCAATATTAATGTTTGGCATAAAGGCAAAAGAGTTGTTTGGGTGGGAAGTGGTGGATCAATTAATAGTAAATTCAAAACCTGAAATCCTTTTTGGAGAGAGGCTTCAGTTAATGTATGACCTGTTGCCATTTGTGCGATTTCCACTTCTACAATATTCCTTACTTGAGAAGTTGCAGAATAGTAACATTGCCTGGCATATTCCTGTTTTCCAAAATCTAGTTAATGAGGCTATCAATTTTGTTAAATGTGGGCTGGCAGGGACAGAAAATGAAGAGAATGTTAGATTCCAACATAGACGGTCCAGTTACAGGGAACTCCAGTACATTTGTGATGGGGATGACCATGGAGTTCTGTACTTTGCCGGCACATCTTATGGTGAACACCCGTGGGTTAATCCTCTTTTGGCAGAGCCTAGGAAAATTACAATCACAGCCAGCAGCCCCCATTCAAGATACACTGATCCCAAGGTTTTGGTCTCAAGAACCTACCAGGGAACATGTTTTGCTGGGCCTCGATTGGAAAATGGACAGAACTGTACCTGGTGGATGGTTGATCTTGGCCAAGATCATCAGGTATGTAACATGCAGATTGTGTATGTTTTAAATATTTTATAA 2160 0.4241 MSEKFLTVPPFECAWREDLKFREAGRGCVAFEAFACNDVTLVFRENVGSQGYHYKRDSSPHYTIILGSHRNRRLRIEVNGKTVVDVAGVGLCCSSSFQSYWISIYDGLISIGNGKYPFQDVVFQWLDSYPNCNVQYIGLSSWDKHVKYRNVNVLSMTHTHVPLWKHVVFGDYQVEDEIDAADCYDYKHMDYDKWGLKNFLESWDLSDVLFIVGEDEKPVPAHKAILAASGNFSLCSSSFVIKVPTVSYPLFHALLHYIYTGWTQIPPEQLGSLRALSLQFEVMPLVKQCEETMERFKLDKKLLMGENVELTYPSIRPHCSTLPSLPVSIQQLRQLKLTSQYGDVNIYIESYGLIARAHKIVLSLWSIPFARMFTNGMSESMSSEVTLRDVPPEAFMAMLDFLYDGQLNDKVLDSGALLLQLLLLADQFGVTFLQQECCKMLLECLSEDSVCPLLQVVSSIPSCRLVKETLQRRISMNFDYYISASTDFVLLDETTFINIIKHPDLTVTSEEKVLNAILMFGIKAKELFGWEVVDQLIVNSKPEILFGERLQLMYDLLPFVRFPLLQYSLLEKLQNSNIAWHIPVFQNLVNEAINFVKCGLAGTENEENVRFQHRRSSYRELQYICDGDDHGVLYFAGTSYGEHPWVNPLLAEPRKITITASSPHSRYTDPKVLVSRTYQGTCFAGPRLENGQNCTWWMVDLGQDHQVCNMQIVYVLNIL 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00429 719 Gene3D Potassium Channel Kv1.1; Chain A 194 306 IPR011333 -
Cca05g00429 719 Pfam BTB/POZ domain 196 294 IPR000210 GO:0005515
Cca05g00429 719 Pfam BTB/POZ domain 334 443 IPR000210 GO:0005515
Cca05g00429 719 SUPERFAMILY POZ domain 329 442 IPR011333 -
Cca05g00429 719 CDD BTB_POZ_ZBTB_KLHL-like 205 280 - -
Cca05g00429 719 ProSiteProfiles BTB domain profile. 206 267 IPR000210 GO:0005515
Cca05g00429 719 SMART BTB_4 342 445 IPR000210 GO:0005515
Cca05g00429 719 SMART BTB_4 206 297 IPR000210 GO:0005515
Cca05g00429 719 Pfam Farnesoic acid 0-methyl transferase 50 146 IPR022041 -
Cca05g00429 719 Gene3D Potassium Channel Kv1.1; Chain A 324 473 IPR011333 -
Cca05g00429 719 Gene3D - 474 596 - -
Cca05g00429 719 SMART BACK_2 451 574 IPR011705 -
Cca05g00429 719 PANTHER OS05G0345500 PROTEIN 3 708 - -
Cca05g00429 719 Pfam BTB And C-terminal Kelch 457 520 IPR011705 -
Cca05g00429 719 SUPERFAMILY POZ domain 194 294 IPR011333 -
Cca05g00429 719 ProSiteProfiles BTB domain profile. 342 411 IPR000210 GO:0005515
Cca05g00429 719 CDD BTB_POZ_ZBTB_KLHL-like 343 408 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00429 - - gmx:100810794 1348.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00429 05 9422701 9430349 Cca05g00429 05 9422701 9430349 ECH