Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00426 ATGGAGGAAGAGATTGAGATACGAAGTGGATTCTGCAGATCCAATTCAATCTTCTACAGCAAGCGGAAGCCCCTTCCTCTCCCTCCTAACCCTTCCCTCGACGTCACCACCTTCATCTCCTCCCGGGCCCACCGTGGCACCACCGCCTTCATCGACGCCGCCACCGGCCAAACCCTCACCTACGCCCAACTCTGGCGCGCGGTGGAGGGCCTCGCCACCTCTCTCTCCTCCATGGGCATCCGCAAGGGCGACGTTGTCCTCATCCTCTCCCCCAACTCCATCCACTTCCCCGTGGTCTGCCTCGCCGCCATGTCCCTCGGCGCCGTCATCACCACCACCAACCCCCTCAACACCGCGCGGGAAATCGCCAAGCAGATCGCGGACTCCAAGCCCCACATCGCCTTCACAACGCCTCCCCTCCTCCCGAAAATCACGGCCGCCTCCCCCTCCCTCCCAATCGTCCTCATGGGCCCCACCTCCACCTCCACTCCCCACGCCAACATCGTGACCACCCTTGAAAACATGATGAAGACAGAGCCCTCGGCCAAGCGCGTGAGGGAGCGCGTGGAGCAGGACGACACCGCCACGCTGCTCTACTCCTCCGGCACGACGGGGCCCAGCAAGGGCGTTGTTTCCTCCCACCGCAACCTCATCGCCATGGTGCAAATCGTCCTCGGCAGGTTCAGGATGGAAGAGAACGAAACCTTCATCTGCACAGTCCCCATGTTTCACATATACGGCCTTGCCGCCTTCGCCACGGGACTCCTCGCTTCCGGCTCCACCATTGTTGTCATGTCCAAATTCGAGATGGACGACATGCTGTCGGCGATTCAGAGGTTCGGCGCCACGTATTTGCCGCTCGTGCCGCCCATTCTGGTGGCCATGCTGAACAACGCCGACGCCATCAAGGGGAAGTACGACTTGAGGACTCTGCATTCGGTGCTCTCCGGTGGGGCTCCGTTGAGCAAGGAGGTCATAGAGGGGTTTGTGCACAAGTATCCCAATGTCACCATTCTTCAGGGTTACGGCTTGACGGAGTCCACCGGCGTTGGGGCCTCCACCGATTCCTTGGAGGAGAGTCGCAGGTACGGCACGGCGGGGCTCCTCTCTCCGGCCACCGAGGCCATGATCGTTGATCCTCACTCCGGCCAATCGCTTCCGGTCAACCAAACCGGTGAGCTCTGGCTCAGGGGTCCCACCATTATGAAAGGTTATTTCAGTAACGAAGAAGCAACCACATCAACCCTTGATTCAAAAGGATGGTTAAGAACAGGGGATGTTTGTTACATTGACAATGATGGATTCATATTTATCGTGGATCGGTTAAAAGAGCTCATCAAATACAAGGGATATCAGGTGCCTCCAGCAGAACTAGAGGCCTTGTTGCTTACTCATCCTGCTATTTTAGATGCTGCTGTGATCCCTTATCCAGATAAAGAGGCGGGGCAGGTTCCAATGGCATATGTAGTGAGGAAGGCTGGAAGTAGCTTATCAGAAAGCCAAGTTATGGATTTTGTTGCAGAACAGGTGGCTCCGTACAAGCGGATTCGAAAAGTGGCGTTTATATCCTCCATACCCAAAAATCCATCTGGCAAAATTCTTCGCAAGGATCTCATCAAGCTCGCAACGTCTAAACTCTAA 1641 0.5649 MEEEIEIRSGFCRSNSIFYSKRKPLPLPPNPSLDVTTFISSRAHRGTTAFIDAATGQTLTYAQLWRAVEGLATSLSSMGIRKGDVVLILSPNSIHFPVVCLAAMSLGAVITTTNPLNTAREIAKQIADSKPHIAFTTPPLLPKITAASPSLPIVLMGPTSTSTPHANIVTTLENMMKTEPSAKRVRERVEQDDTATLLYSSGTTGPSKGVVSSHRNLIAMVQIVLGRFRMEENETFICTVPMFHIYGLAAFATGLLASGSTIVVMSKFEMDDMLSAIQRFGATYLPLVPPILVAMLNNADAIKGKYDLRTLHSVLSGGAPLSKEVIEGFVHKYPNVTILQGYGLTESTGVGASTDSLEESRRYGTAGLLSPATEAMIVDPHSGQSLPVNQTGELWLRGPTIMKGYFSNEEATTSTLDSKGWLRTGDVCYIDNDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPAILDAAVIPYPDKEAGQVPMAYVVRKAGSSLSESQVMDFVAEQVAPYKRIRKVAFISSIPKNPSGKILRKDLIKLATSKL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00426 546 SUPERFAMILY Acetyl-CoA synthetase-like 41 544 - -
Cca05g00426 546 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
Cca05g00426 546 Pfam AMP-binding enzyme 42 448 IPR000873 -
Cca05g00426 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 545 - -
Cca05g00426 546 Gene3D - 16 443 IPR042099 -
Cca05g00426 546 PANTHER BNAA06G14440D PROTEIN 7 545 - -
Cca05g00426 546 CDD 4CL 34 538 - -
Cca05g00426 546 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Cca05g00426 546 Gene3D - 444 545 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00426 Cca-Chr5 9331062 9337816 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00426 5 546 Monolignol Biosynthesis Gene Families AT1G20500 65.328 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00426 K10526 - gmx:100811344 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00426 05 9331062 9337816 Cca05g00426 05 9331062 9337816 ECH