Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00423 ATGACGCTTCACATAGTGTTGGCGGCTCTGCTATGTTTTTCTCTTCTGGCCATCGCTTTCGCTGAAGATCCATACAGGTTCTTCAACTGGAATGTTACATACGGCGACATTTATCCACTTGGTGTTCGCCAACAGGGAATACTTATCAACGGTCAATTCCCAGGTCCAGACATTCACTCTGTTACCAACGACAACCTCATCATCAATGTCTTCAACAGCTTGGACCAGCCATTTCTCCTCTCCTGGAATGGGGTCCAACAGAGAAGGAACTCATTCGAAGATGGGGTTTTCGGAACAACATGCCCCATTCCACCAGGAGGGAACTTCACTTACATTCTTCAAGTGAAGGATCAAATTGGAAGCTTCTACTACTTCCCATCTCTTGGATTCCACAAAGCTGCTGGTGGATTTGGAGGCATTAGGATTTTGAGCAGGCCTAGAATTCCTGTCCCTTTCGATGATCCCGCTGGTGATTACACTGTCCTCATTGGAGATTGGTACAAGTCCAACCATACGGATTTGCAGGCTCAACTTGATAGCGGTAGGAAGCTGCCTTTCCCTGATGGAATCCTAATCAATGGTCGTGGCTCTAACGGAGCATCTTTCAATGTGGAACAAGGGAAGACCTACAGGCTGAGAATATCAAATGTGGGGTTGGAAAATTCCCTCAACTTTCGCATACAGAACCACAAATTGAAGCTGGTGGAAGTGGAAGGAACGCACACTCTACAAACTACCTACTCATCCCTCGACGTGCACGTGGGCCAATCTTACTCTGTTCTAGTGACTGCGGATCAACCTGCTCATGACTATTACATAGTGGTCTCCACTCGATTTACCTCCACAGTTCTCACCACCACTGGAATTCTTCGCTATAGCAACTCTGCAGGCCAAGTATCAGGCCCAATCCCTGGTGGACCCACCATCCAAGTTGATTGGTCTTTGAACCAGGCCCGCTCCGTCAGGACCAACCTGACAGCAAGTGGACCTAGGCCGAACCCGCAAGGGTCGTACCATTACGGTATGATAAACACAACGAGGACCATCGTACTGTCGAGTTCCGCTGGTCAAGTGAATGGCAAACAAAGATACGCAATTAACAGTGTGTCCTATGTTGCTCCCGACACTCCTCTTAAGCTCGCCGACTACTTCAAAATCTCTGGCGTTTTCCGCGTGGGAAGCATTTCTGACAGACCCACCGGCGGTGGCCTATACCTTGACACATCTGTTATGCAAACTGATTACAGAACATTTGTGGAGATTGTCTTCCAAAACGATGAAGACATCATTCAGAGCTATCATCTCGATGGCTACTCTTTCTTTGTCGTTGGTATGGATGGAGGACAGTGGACAACTGCCAGCAGGAACCAGTACAATCTTCGAGATGCAGTTTCACGGTGCACCGCTCAGGTGTATCCCAAGTCATGGACTGCTATATATGTTGCGCTTGACAATGTGGGAATGTGGAACTTGAGGTCTGAATTTTGGGCACGGCAATACCTTGGCCAACAGTTTTATATGCGCGTTTATACAACATCGACCTCAATCAGAGACGAATATCCTGTTCCAAAGAATGCACTACTTTGTGGTAAGGCAAGTGGGAGACACACTCGACCCCTTTGA 1623 0.4781 MTLHIVLAALLCFSLLAIAFAEDPYRFFNWNVTYGDIYPLGVRQQGILINGQFPGPDIHSVTNDNLIINVFNSLDQPFLLSWNGVQQRRNSFEDGVFGTTCPIPPGGNFTYILQVKDQIGSFYYFPSLGFHKAAGGFGGIRILSRPRIPVPFDDPAGDYTVLIGDWYKSNHTDLQAQLDSGRKLPFPDGILINGRGSNGASFNVEQGKTYRLRISNVGLENSLNFRIQNHKLKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPAHDYYIVVSTRFTSTVLTTTGILRYSNSAGQVSGPIPGGPTIQVDWSLNQARSVRTNLTASGPRPNPQGSYHYGMINTTRTIVLSSSAGQVNGKQRYAINSVSYVAPDTPLKLADYFKISGVFRVGSISDRPTGGGLYLDTSVMQTDYRTFVEIVFQNDEDIIQSYHLDGYSFFVVGMDGGQWTTASRNQYNLRDAVSRCTAQVYPKSWTAIYVALDNVGMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGKASGRHTRPL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00423 540 Pfam Multicopper oxidase 376 512 IPR011706 GO:0005507|GO:0016491
Cca05g00423 540 PANTHER MULTI-COPPER OXIDASE 8 533 IPR045087 -
Cca05g00423 540 CDD CuRO_1_AAO_like_1 27 142 IPR034273 GO:0005507
Cca05g00423 540 Gene3D - 25 146 IPR008972 -
Cca05g00423 540 Gene3D - 341 537 IPR008972 -
Cca05g00423 540 SUPERFAMILY Cupredoxins 20 172 IPR008972 -
Cca05g00423 540 PANTHER - 8 533 - -
Cca05g00423 540 Gene3D - 151 303 IPR008972 -
Cca05g00423 540 CDD CuRO_3_AAO_like_1 374 494 IPR034275 GO:0005507
Cca05g00423 540 SUPERFAMILY Cupredoxins 152 332 IPR008972 -
Cca05g00423 540 Pfam Multicopper oxidase 158 294 IPR001117 -
Cca05g00423 540 Pfam Multicopper oxidase 32 145 IPR011707 GO:0005507
Cca05g00423 540 SUPERFAMILY Cupredoxins 342 531 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00423 Cca-Chr5 9217421 9223119 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00423 - - gmx:100812416 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00423 05 9217421 9223119 Cca05g00423 05 9217421 9223119 ECH
Cca05g00423 05 9217421 9223119 Cca07g00222 07 2820635 2829747 PCT