Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00421 ATGTTGTCATATAGTCGCCACATTCTAAATCCTCGTCTCTTAAATGTCACTCGCTTCCATCCTTTGACTCTCACAACGTTATTCAAATCTCATTCTTCATTCGCCAACACAATGCCTTCTCTCTCCGCTCTCCACCAACCTCTCCAATATCCCACCGCTCGCAGAGACCACTCCGTCGTCGACAACTACCACGGCGTCACCGTCCCCGACCCCTACCGCTGGCTCGAGGATCCCGAGGCGGAGGAAGTGAAGGAGTTCGTGCAGAAGCAGGTGGCGTTGACGGAGTCGGTGCTGCGGAAGTGCGAGTGCAGGGGGAAGCTCGCGGAGAAGATGACGGAGCTCTTTGATAATCCGCGTTACAACGCTCCTTTCCGACGCGGCGATAAGTACTTTTACTTCCACAACACGGGGCTTCAGGCGCAGAGCGTGCTCTACGTGCAGGACGCTTTGGAGGCTCAGCCTCGGGTTTTGCTCGATCCCAATGCGCTCAGCGAAGACGGCACCGTTTCGCTCAACACCTTCTCTGTGAGCAAAGATGCTAAGTTCTTGGCTTATGGTCTTAGCTCCAGCGGCAGCGACTGGGTCACTATAAACTTGATGCGTGTTCACGACAACGCTGTTGAGACTGATACTTTATATTGGGTCAAGTTTTCCAATATTAGTTGGACGCATGATAGCAAAGGTTTCTTCTACAGCCGCTATCCAATACCTAAGGATGGGGCAGTAGTAGATGCCGGCACGGAGACTAATGCAAACCTTTATCATGAGCTCTATTATCATTCTTTGGGTACTTCTCAATCGGAAGATATTATGTGTTGGAGAGACCTTGAGAATCCTAAATATATGTTTGAAGCAAGTGTTACTGAGGACGGCAAGTATGTTCTTCTCTATATTGGAGAAGGGTGTGATCCAGTTAACAAGCTTTACTACTGTGACTTGTCTGAACTACCAAACGGACTGGAAGGTTTTAGGAATGAAAATTCCCTCCTCCCATTTGTCAAGCTTGTTGATAAATTTGAAGGACTATATGAGGCCATTGCAAATGATGACACCGTGTTTACATTTTTAACGAATAAAGATGCTCCAAAGTATAAAATAGCCCGAGTAGATTTGAAAGAGCCAAATGTCTGGACTGATGTTATCCAAGAGTCTGAAAAGGATGTACTCCAGTCAGCACGTGCTGTAAATGGTAACCAGCTCATTGTGAGCTACTTGAGTGATGTGAAACATGTTCTGCAAGTAAGAGACTTGGAGACAGGTTCCTTGCAGCATCAGTTACCAATTGACATTGGCACAGTCAGTGAAATATCTGCACGGCGTGAAGATAACGTGGCCTTCATTAGTTTTACAAGCTTTTTGACACCTGGAATCATATATCAGTGCGACCTGGGAACACAAATACCTGATTTGAAGATATTTCGCGAGATTGTCATCTCTGGGTTTGATCGCTCTGAGTTTCATGTCAATCAGGTTTTTGTGCCCGGTAAAGATGGTACCAAGATTCCAATGTTCATTGTTGCCAAAAAGGATATTGCTTTGGATGGTTCACACCCGTGTCTGTTATATGGATATGGTGGTTTTAACGTCAGTATCACACCAAATTTCAGCATCAGTCGTAACATACTCGCAAGACATTTAGGTGCTGTTTACTGCATAGCAAATATTCGTGGTGGTGGAGAATATGGGGAGGAATGGCATAAAGCTGGCTCCCTTGCAAATAAGCAAAATTGCTTTGATGACTTCATTTCAGCAGCTGAATACCTTGTATCTGCTGGCTATACGCAACCCAGAAAGTTATGTATCGAGGGTGGAAGCAACGGTGGACTTCTTATTGGTGCTTGCATAAATCAGAGACCTGATCTTTTTGGTTGTGCACTGGCTCATGTTGGTGTTATGGACATGCTACAGTTCCACAAATTTACCATAGGTCATGCTTGGACATCAGAATTTGGTTGTTCAGACAAGGAGGAAGAATTTCATTGGCTAATCAAGTACTCACCGTTGCATAACGTCCGAAGACCTTGGGAACAGCATCCTAATCAGTCAATCCAGTACCCATCAACGATGCTGTTGACAGCTGATCATGACGATCGTGTTGTGCCATTGCATTCATTAAAGCTATTGGCGACGATGCAGTATGTCCTCGTTACTAGCCTTGATAAAAGTCCCCAGACGAAGCCTATAATTGGTCGCATTGAATGCAAGGCTGGGCATGGAGCTGGGCGTCCAACAAAGAAATTGATAGATGAGGCTGCTGACCGGTACAGTTTCATGGCCGAAATGTTGGAAGCCCATTGGATTGAATAG 2307 0.4564 MLSYSRHILNPRLLNVTRFHPLTLTTLFKSHSSFANTMPSLSALHQPLQYPTARRDHSVVDNYHGVTVPDPYRWLEDPEAEEVKEFVQKQVALTESVLRKCECRGKLAEKMTELFDNPRYNAPFRRGDKYFYFHNTGLQAQSVLYVQDALEAQPRVLLDPNALSEDGTVSLNTFSVSKDAKFLAYGLSSSGSDWVTINLMRVHDNAVETDTLYWVKFSNISWTHDSKGFFYSRYPIPKDGAVVDAGTETNANLYHELYYHSLGTSQSEDIMCWRDLENPKYMFEASVTEDGKYVLLYIGEGCDPVNKLYYCDLSELPNGLEGFRNENSLLPFVKLVDKFEGLYEAIANDDTVFTFLTNKDAPKYKIARVDLKEPNVWTDVIQESEKDVLQSARAVNGNQLIVSYLSDVKHVLQVRDLETGSLQHQLPIDIGTVSEISARREDNVAFISFTSFLTPGIIYQCDLGTQIPDLKIFREIVISGFDRSEFHVNQVFVPGKDGTKIPMFIVAKKDIALDGSHPCLLYGYGGFNVSITPNFSISRNILARHLGAVYCIANIRGGGEYGEEWHKAGSLANKQNCFDDFISAAEYLVSAGYTQPRKLCIEGGSNGGLLIGACINQRPDLFGCALAHVGVMDMLQFHKFTIGHAWTSEFGCSDKEEEFHWLIKYSPLHNVRRPWEQHPNQSIQYPSTMLLTADHDDRVVPLHSLKLLATMQYVLVTSLDKSPQTKPIIGRIECKAGHGAGRPTKKLIDEAADRYSFMAEMLEAHWIE 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00421 768 Pfam Prolyl oligopeptidase family 534 763 IPR001375 GO:0006508|GO:0008236
Cca05g00421 768 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 518 536 IPR002470 GO:0004252|GO:0006508
Cca05g00421 768 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 545 569 IPR002470 GO:0004252|GO:0006508
Cca05g00421 768 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 573 592 IPR002470 GO:0004252|GO:0006508
Cca05g00421 768 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 603 623 IPR002470 GO:0004252|GO:0006508
Cca05g00421 768 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 685 707 IPR002470 GO:0004252|GO:0006508
Cca05g00421 768 PANTHER PROLYL ENDOPEPTIDASE 34 768 - -
Cca05g00421 768 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 51 465 IPR023302 GO:0004252
Cca05g00421 768 PANTHER PROLYL OLIGOPEPTIDASE-LIKE PROTEIN 34 768 - -
Cca05g00421 768 Gene3D alpha/beta hydrolase 59 758 IPR029058 -
Cca05g00421 768 ProSitePatterns Prolyl endopeptidase family serine active site. 580 610 IPR002471 GO:0004252|GO:0006508
Cca05g00421 768 Gene3D - 118 477 - -
Cca05g00421 768 SUPERFAMILY Peptidase/esterase 'gauge' domain 46 466 - -
Cca05g00421 768 SUPERFAMILY alpha/beta-Hydrolases 488 712 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00421 Cca-Chr5 9182042 9187263 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00421 K01322 - gmx:100812955 1359.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00421 05 9182042 9187263 Cca05g00421 05 9182042 9187263 ECH
Cca05g00421 05 9182042 9187263 Cca07g00224 07 2855634 2862720 PCT