Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00412 ATGGGACTGGGGCTGTTCAAGGCGTTGTTTTGCTGCAACAAGCCCCATGAAATTTCGATCGAAGATACGTGGGAGTCCTCTCCCGAAGCAAGCCCTAGGAAAAGAGAAGCAAAGGCAAGGCCTCAAGCTTCAGCTCCGAAACACACGAGCTCAACACAAATAGGAGCAATCCTAGGAAAACCGTACGTGAACATAAACCAAATGTACGAGATGAAGAAAGAGCTAGGTAGCGGGCAATCCGGCGTGACTTATCTGTGCATAGAGAAACGCACGGGAAGAGAATACGCGTGCAAGTCGATTCCGAGGGGGAAGCTGCTGAGTCCGCAGGAGATGGAGGACGTGAGAAGAGAGGTCATGATTCTGCAGCATCTTTCGGGGCAACCAAACATTGTGGAGTTCAGAGGGGCGTACGAGGATAGGCAGCACGTGCACCTCGTGATGGAGCTGTGCAGTGGTGGGGAACTCTTCGACCGCATCATTGCCAAGGGGAACTACTCCGAGCGCGAAGCCGCAACGGTCATGAGACAGATCGTCAACGTCGTTCACGTCTGCCATTTCATGGGCGTCATGCATCGTGACCTTAAACCCGAGAATTTCTTGCTCGCTACTAAGGACCCCGATGCCGCAGTCAAAGCCACTGATTTTGGACTCTCCATTTTCATCGAGGAAGGTTAG 675 0.5244 MGLGLFKALFCCNKPHEISIEDTWESSPEASPRKREAKARPQASAPKHTSSTQIGAILGKPYVNINQMYEMKKELGSGQSGVTYLCIEKRTGREYACKSIPRGKLLSPQEMEDVRREVMILQHLSGQPNIVEFRGAYEDRQHVHLVMELCSGGELFDRIIAKGNYSEREAATVMRQIVNVVHVCHFMGVMHRDLKPENFLLATKDPDAAVKATDFGLSIFIEEG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00412 224 Gene3D Phosphorylase Kinase; domain 1 71 154 - -
Cca05g00412 224 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 32 224 - -
Cca05g00412 224 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cca05g00412 224 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Cca05g00412 224 SUPERFAMILY Protein kinase-like (PK-like) 69 222 IPR011009 -
Cca05g00412 224 MobiDBLite consensus disorder prediction 21 42 - -
Cca05g00412 224 Gene3D Transferase(Phosphotransferase) domain 1 155 224 - -
Cca05g00412 224 Pfam Protein kinase domain 69 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00412 224 SMART serkin_6 69 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00412 224 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 224 - -
Cca05g00412 224 MobiDBLite consensus disorder prediction 21 51 - -
Cca05g00412 224 ProSiteProfiles Protein kinase domain profile. 69 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00412 Cca-Chr5 8942727 8943401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00412 41 224 EF-hand Containing Proteins AT1G50700 66.304 3.45e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca05g00412 Pkinase 6.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00412 K13412 - gmx:100816157 382.489