Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00410 ATGCCTGGGAATAATTTGCATGATATTGCCAACGAGGTTCATCTTGATGCACAGTTGCTGGAGAGATACAATCATGGTGTCAATTTCAGCAAAGAGAGTGGAATTGTTTTCATTCCGGGAAGAGAAAAGCAGTTTGCATATATGTTAAATACTTCTAGAAGAAAGGTGAGAAAGCTAAATTGCCAACAGAAAGTTCTATGGCGTTTTCAACTCAAGATGGTACTGCCTCTTGAAGTTCAGAATATGAAACTTCAGGATCCAGTGGACCTACTATTGCTAGTGCTACTGGCCTCCCAGGCATTATGCTTGGAGAATAAAATTGGCCGAGGTGGATTTGGAGCTGTTTATTATGCAGAATTGAGAGGCGAGAAAACAGCAATTAAGAAGATGGACGTACAAGCATCAACCGAATTTCTTTGTGAATTGAAGGTCTTAACTCACGTTCATCACTTGAATCTGGTGCATTTGATTGGATATTGTGTTGAGGGATCTCTTTTCCTTGTATATGAATATATTGACAACGGAAACTTGGGCCAATATTTGCACGGTACAGGGAAAGATACTTTGCCATGGTCTAGTCTGAGTGCAAATTACAAAAACTTTTGTGGAAAGGTTGCAGATTTTGGGTTGACCAAACTTATTTAA 645 0.3938 MPGNNLHDIANEVHLDAQLLERYNHGVNFSKESGIVFIPGREKQFAYMLNTSRRKVRKLNCQQKVLWRFQLKMVLPLEVQNMKLQDPVDLLLLVLLASQALCLENKIGRGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVHLIGYCVEGSLFLVYEYIDNGNLGQYLHGTGKDTLPWSSLSANYKNFCGKVADFGLTKLI 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00410 214 Pfam Protein tyrosine and serine/threonine kinase 102 192 IPR001245 GO:0004672|GO:0006468
Cca05g00410 214 SMART tyrkin_6 101 214 IPR020635 GO:0004713|GO:0006468
Cca05g00410 214 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 2 193 IPR044812 GO:0019199|GO:0045087
Cca05g00410 214 ProSitePatterns Protein kinases ATP-binding region signature. 107 129 IPR017441 GO:0005524
Cca05g00410 214 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 3 2 193 - -
Cca05g00410 214 SUPERFAMILY Protein kinase-like (PK-like) 93 213 IPR011009 -
Cca05g00410 214 ProSiteProfiles Protein kinase domain profile. 101 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00410 214 Gene3D Transferase(Phosphotransferase) domain 1 91 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00410 Cca-Chr5 8920260 8923045 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00410 2 47 Receptor kinase-like Gene Family AT3G21630 43.478 2.77e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Cca05g00410 PK_Tyr_Ser-Thr 1.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00410 - K13429 ccaj:109796409 189.889