Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00407 ATGGAAAACAGATTCAGATTACCACTTTTCTTCTTGTTATTGGCCACTACATCGTTTAGTGCAGAATCCAAGTGTAGAAGGGTTTGTGACTTAGCTCTAGCTTCCTACTACCTACCAGAAGGTAACTTGACATACATAACAGACCTTATGAAATCTCAGCTTCTCTCAGAAGCTGAAGATATTGTGAGCTACAACAAAGACATAGAAAGCAAAGACCAAGTCCCAGCCTCTACCAGAGTGAACGTACCATTCCCTTGTGATTGCATAAATGGGGAGTTTCTTGGCCATATATTTCAATACAACCTTGCAGTAGGAGACACGTACACGTCCATTGCCAATCAGAACTACTCCAATTTGACTACTGATAAGTGGTTGCAGAGTTTCAACAGCTATTCGCCCACTAATATTCCTGACAGTGGGACTCTTAATGTCACCATTAACTGTTCCTGTGGGAACAGTGACGTTTCCAAGGATTATGGATTGTTCATCACATACCCGCTAAGACCTGAGGATTCTTTGCAGTCAATTGCCAACAAGACTGGGATTAAGAGCGAGTTGTTGCTTGAGTACAACCCAGGTGTCAATTTTAGCCAAGGGAGTGGTCTGGTTTATATTCCAGGGAAAGGTCTTGCAGGTGGGGTAATTGCTGGAATATCTGTTGGAGTAGTAACAGGACTTCTTCTGCTATTGGCATTTTGCGTGTATGTTATATATTACCGAAGAAAAATGTTATGGAGGAAGAAATTGCTCTCAGAAGAATCCAGGATGAAGTCAACTAGAGTTAAGGATGATGAAGCCACGGGTGATCCTTCTGCAGAAGGTGGTAATAACACCACTGGCATTAGGGTGGATAAATCAGCAGAGTTTACATATGAGGAACTAGTCAATGCCACAAATAACTTCAGTTTGGCTAATAAAATTGGTCAAGGTGGTTTTGGGGAAGTCTATTATGCAGAGCTGAAAGGCGAGCAAGCTGCAATAAAAAAGATGGACATGCAAGCATCAGGACAATTTCTTGCTGAACTGAAAGTGTTGACACGTGTTCATCATTTGAACCTGGTGCGCTTGATTGGATATTGTGTTAAGGATTCCCTTTTCCTTGTCTATGAATTCATTGAGAATGGAAACTTAGGACAACATCTACGTAAATCAGGTTTTGATCCTTTGCCATGGTCTACCCGAGTTCAAATTGCTCTGGATTCAGCCAGAGGTCTTCAATACATTCATGAGCATACGGTGCCTGTATATATCCATCGTGACATAAAGTCAGAAAATATTTTAATTGACAAAAACTTCTGTGCAAAGGTTGCAGACTTTGGATTAACCAAGTTGATTGATGTAGGAAGTTCATCACTTCCCACTGATAATATGAAAGGCACATTTGGCTACATGCCACCAGAATATGCATATGGAAATGTTTCTCCCAAAATAGATGTCTATGCTTTTGGAGTTGTTCTTTATGAACTAATTTCTGCTAAAGAAGCAGTGATCAAGGGTCCTGAATTAAAGGGCCTTGTATCTTTGTTTGATGAAGTTTTTGAACAAGAAGATCCCACAGAAGGACTTAAAAAACTGGTGGATCCTAGGCTCGGAGATAACTACCCAATTGACTCAGTTTGCAAGATGGCACATCTTGCGAGAGCATGCACAGAGAGTGATCCACAACAACGTCCAAGTATGAGTTCTGTTGTGGTTAATCTTACAGCACTTATTTCAACTACTGAGGATTGGGATATTGCTTCCATCATTGAAAATTCAACTCTTGTAAATCTAATGTCTGGGAAATAG 1788 0.4055 MENRFRLPLFFLLLATTSFSAESKCRRVCDLALASYYLPEGNLTYITDLMKSQLLSEAEDIVSYNKDIESKDQVPASTRVNVPFPCDCINGEFLGHIFQYNLAVGDTYTSIANQNYSNLTTDKWLQSFNSYSPTNIPDSGTLNVTINCSCGNSDVSKDYGLFITYPLRPEDSLQSIANKTGIKSELLLEYNPGVNFSQGSGLVYIPGKGLAGGVIAGISVGVVTGLLLLLAFCVYVIYYRRKMLWRKKLLSEESRMKSTRVKDDEATGDPSAEGGNNTTGIRVDKSAEFTYEELVNATNNFSLANKIGQGGFGEVYYAELKGEQAAIKKMDMQASGQFLAELKVLTRVHHLNLVRLIGYCVKDSLFLVYEFIENGNLGQHLRKSGFDPLPWSTRVQIALDSARGLQYIHEHTVPVYIHRDIKSENILIDKNFCAKVADFGLTKLIDVGSSSLPTDNMKGTFGYMPPEYAYGNVSPKIDVYAFGVVLYELISAKEAVIKGPELKGLVSLFDEVFEQEDPTEGLKKLVDPRLGDNYPIDSVCKMAHLARACTESDPQQRPSMSSVVVNLTALISTTEDWDIASIIENSTLVNLMSGK 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00407 595 MobiDBLite consensus disorder prediction 256 280 - -
Cca05g00407 595 ProSiteProfiles Protein kinase domain profile. 301 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00407 595 PANTHER LYSM RECEPTOR KINASE 1B 4 595 - -
Cca05g00407 595 Gene3D Transferase(Phosphotransferase) domain 1 372 587 - -
Cca05g00407 595 CDD STKc_IRAK 307 564 - -
Cca05g00407 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Cca05g00407 595 Pfam LysM domain 168 196 IPR018392 -
Cca05g00407 595 Pfam Protein tyrosine and serine/threonine kinase 303 567 IPR001245 GO:0004672|GO:0006468
Cca05g00407 595 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 4 595 IPR044812 GO:0019199|GO:0045087
Cca05g00407 595 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Cca05g00407 595 SUPERFAMILY Protein kinase-like (PK-like) 283 567 IPR011009 -
Cca05g00407 595 Gene3D Phosphorylase Kinase; domain 1 273 371 - -
Cca05g00407 595 SMART serkin_6 301 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00407 Cca-Chr5 8889359 8895176 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00407 1 595 Receptor kinase-like Gene Family AT3G21630 55.573 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca05g00407 PK_Tyr_Ser-Thr 5.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00407 - K13429 gmx:100803042 954.51