Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00406 ATGCTGGACTCCGTGCTTCTGGCGCTTTTCCTGCCCTGCCTCGGCATGAGCGCCGTGTTCATAGTCTACATGTGTCTTCTATGGTACGCCACCACCCACCACAACGACAACGGGCTACCGGCCAAGCCCGTCTCCGGCACCGGCCTCTCCCCCTCCCAGCTCGACAAGCTCCCCAGAATTACCGGAAAAGACCTGGTCTTGGGAAGCGAATGCGCCGTCTGCCTCGACGAGATCGGGGCGGAGCAACCGGCGCGAGTGGTTCCCGGTTGCAACCACGGCTTCCACTTGGAATGCGCCGACACGTGGCTCACCAAGCACCCGCTGTGCCCTCTCTGCAGAGCCAAACTCGACCCCGCGTTCTTCTCTTCCTCTGAAAATCCATGCTAA 387 0.6124 MLDSVLLALFLPCLGMSAVFIVYMCLLWYATTHHNDNGLPAKPVSGTGLSPSQLDKLPRITGKDLVLGSECAVCLDEIGAEQPARVVPGCNHGFHLECADTWLTKHPLCPLCRAKLDPAFFSSSENPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00406 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 128 - -
Cca05g00406 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 128 - -
Cca05g00406 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Cca05g00406 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 119 IPR013083 -
Cca05g00406 128 Pfam Ring finger domain 70 113 IPR001841 -
Cca05g00406 128 SUPERFAMILY RING/U-box 55 118 - -
Cca05g00406 128 SMART ring_2 71 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00406 Cca-Chr5 8858216 8858602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00406 1 128 C3H Transcription Factor Family AT5G42200 48.529 1.10e-42 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00406 K19037 - gmx:100817919 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00406 05 8858216 8858602 Cca05g00406 05 8858216 8858602 ECH
Cca05g00406 05 8858216 8858602 Cca07g00239 07 3057538 3058757 PCT