Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00405 ATGAATCCCTCTCTGTACCAACATTGCAGATCTGCGCCTTTTGGAGCTCCACTCCACCTTTTGCTTGCGGCGCGACTTTGGCTTCCACGACGACGACGGGTTCCGTGCAAGAAGCACGGAGGGGTTAGGTTCACTGTGAATGGGAGGGACTACTTTGAGCTTGTGTTGATCAGCAACGTGGCTGGGGCAGGATCCATCCAATCTGTATCCATTAAAGGCTCCAAAACTGTGTGGATGGCCATGTCAAGAAATTGGGGTGCCAATTGGCAATCCAATGCATATTTGAATGGTCAATCTTTGTCCTTCAGAGTCACAACCACCGATGGAGAAGTCAGAGTTTTTCCAAATATAGTTCCAGCAAGTTGGACATTTGGCCAAACTTTCTCTAGCCCAGTTCAGTTCTAA 405 0.484 MNPSLYQHCRSAPFGAPLHLLLAARLWLPRRRRVPCKKHGGVRFTVNGRDYFELVLISNVAGAGSIQSVSIKGSKTVWMAMSRNWGANWQSNAYLNGQSLSFRVTTTDGEVRVFPNIVPASWTFGQTFSSPVQF 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00405 134 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 51 130 IPR007117 -
Cca05g00405 134 PANTHER EXPANSIN 32 134 - -
Cca05g00405 134 PANTHER EXPANSIN-A15 32 134 IPR002963 GO:0009664
Cca05g00405 134 SUPERFAMILY PHL pollen allergen 38 130 IPR036749 -
Cca05g00405 134 Pfam Expansin C-terminal domain 42 119 IPR007117 -
Cca05g00405 134 PRINTS Expansin signature 40 52 IPR002963 GO:0009664
Cca05g00405 134 PRINTS Expansin signature 87 108 IPR002963 GO:0009664
Cca05g00405 134 PRINTS Expansin signature 116 132 IPR002963 GO:0009664
Cca05g00405 134 PRINTS Expansin signature 52 73 IPR002963 GO:0009664
Cca05g00405 134 Gene3D - 41 134 IPR036749 -
Cca05g00405 134 PRINTS Expansin/Lol pI family signature 24 40 IPR007118 GO:0005576
Cca05g00405 134 PRINTS Expansin/Lol pI family signature 116 130 IPR007118 GO:0005576
Cca05g00405 134 PRINTS Expansin/Lol pI family signature 78 92 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00405 Cca-Chr5 8840450 8849481 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00405 32 134 Expansin Gene Family AT1G20190 75.728 4.08e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00405 - - ccaj:109816694 211.846