Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00388 ATGGTTGCTTTTATGAAGCTTCCTTCCTCACTGCTCCAATATTTCTTCTTATTGCTATCTGTTTTTGTGTGGAAAACAAGTTCAGTTGTGAAACTTCCCCCAAATGTATCAGTTCCAGCAGTGTTGGTGTTTGGAGATTCGATCATGGACACAGGCAACAACAACAACAACTTGGTAACAACAGCTCGCTGCAATTTTCCACCATATGGGATAGATTTTCCTGGAAGGGTCCCAACCGGTAGATTTAGTAACGGAAAGGTTCCATCTGATCTTATAGTTGAAGAATTGGGCATTAAAGAGTTTCTACCAGCATACTTGGATCCAAATCTCCAACCGGAGGAATTAGCCACCGGTGTGTGCTTTGCATCTGGTGGCGCCGGTTACGATTCATTGACATCGCAAACAGCGTCATGTATATCGTTATCGGGTCAAGTAGACTTGTTCAAAGAATACATAGGAAAGTTAAGAGGAGTGGTTGGAGAAGACAGAACGGAGTTCATCTTGGCCAACAGTATATTTATTGTGGTATTTGGAAGCAACGACATTTCCAATACATACTTCTTGTCTCGTATTAGACAACTGCAATATGATCTTCCTGCATATACTGATCTTATGCTCAGCTCAGCTTCCAATTTCTTGAAGGAGATATATGAACTAGGGGCACGGAGGATTGCAGTATTCAATGTACCGCCAATTGGGTGTTTGCCATTTCAGAGAACTGCAGCAGGAGGAAAAGAGAGAAAAGTTGTAGTAAACTATAACAACGCAGTACAGTTTTTCAACGCCAAATTGTCAGATCAACTCCATTCTCTTAATCACAACCTTCCAACTAGCAGGATCGTCTACATTGATGTTTACAGCCCTCTCCTCGACATCATTCTAAACTACAAAAAATATGGTTATAAATTCGGAGACAGAGGGTGCTGTGGCACGGGTACAATAGAGGTTGTGTTATTATGCAACCATTTAACTCCCTTGTGTTCCAACGACTTGGAGTATGTGTTTTGGGACAGTTTTCACCCTACTGAAAGCGTTTATAAGAAGCTCATAGCACCTATTCTTAAAAAATATTTGAATGATTTTTTGTGA 1089 0.4077 MVAFMKLPSSLLQYFFLLLSVFVWKTSSVVKLPPNVSVPAVLVFGDSIMDTGNNNNNLVTTARCNFPPYGIDFPGRVPTGRFSNGKVPSDLIVEELGIKEFLPAYLDPNLQPEELATGVCFASGGAGYDSLTSQTASCISLSGQVDLFKEYIGKLRGVVGEDRTEFILANSIFIVVFGSNDISNTYFLSRIRQLQYDLPAYTDLMLSSASNFLKEIYELGARRIAVFNVPPIGCLPFQRTAAGGKERKVVVNYNNAVQFFNAKLSDQLHSLNHNLPTSRIVYIDVYSPLLDIILNYKKYGYKFGDRGCCGTGTIEVVLLCNHLTPLCSNDLEYVFWDSFHPTESVYKKLIAPILKKYLNDFL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00388 362 CDD SGNH_plant_lipase_like 39 351 IPR035669 -
Cca05g00388 362 Pfam GDSL-like Lipase/Acylhydrolase 41 350 IPR001087 GO:0016788
Cca05g00388 362 Gene3D SGNH hydrolase 31 358 IPR036514 -
Cca05g00388 362 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 15 358 - -
Cca05g00388 362 SUPERFAMILY SGNH hydrolase 168 357 - -
Cca05g00388 362 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 41 52 IPR008265 GO:0006629|GO:0016298
Cca05g00388 362 PANTHER GDSL ESTERASE/LIPASE EXL3 15 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00388 Cca-Chr5 8478213 8483413 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00388 35 359 Pollen Coat Proteome AT1G75910 39.329 4.04e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00388 - - gmx:100776769 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00388 05 8478213 8483413 Cca05g00388 05 8478213 8483413 ECH
Cca07g00254 07 3203620 3221005 Cca05g00388 05 8478213 8483413 PCT