Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00384 ATGGCAGAAGTGGAACTAGCCCCAGAACAAGGTGTCACGTCTAAAAAGGACCAACCAACTAAAACGGAGAGTGTTTCGTTTTTTGGGTTGTTCTCTGCGGCTGATACAACTGACTGTGTGTTAATGTTCCTCGGAAGTATCGGTTCCTTTGTCCATGGTGCTGCTCTTCCGGTTTTCTTCATTTTGTTCGGTCGTATGATTGATTCTTTGGGACATCTTTCTAATGACCCTCACAAATTGTCCTCAAGAATTTCTGAGCATGCTTTGTATTTGGTCTATCTTGGAGGAGTTGTTCTGATATCGGCTTGGATGGGTGTTGCTTTCTGGATGCAAACAGGGGAGAGACAAACGGCACGTTTGCGCTTGAAATATTTGCAGGCAGTGCTAAAGAAGGATATTAATTTCTTTGACAATGAAGCCAGGGATGCTAATATCATTTTCCACATCTCCAGTGATGCAATACTGGTACAAGATGCAATTGGTGACAAGACAGGCCATGCCATTCGTTACCTTTCTCAATTCATTGTTGGATTTGCCATTGGATTCACCTCAGTGTGGCAGCTCACTCTACTCACCTTGGCCGTGGTTCCATTGATAGCTATAGCTGGGGGAGCTTATACAATAATCATGTCTACTTTATCAGAAAAGGGTGAAGCAGCTTATGCTGAAGCTGGAAAGGTTGCAGAAGAGGTGATTTCTCAAGTGCGTACTGTTTACTCATTTGTAGGAGAAGAGAAAGCAGTTGGCTCATACTCAAAGTCTCTTGATAATGCACTGAAGTTGGGCAAGAAGGGTGGTTTGGCAAAAGGAGTTGGAGTAGGCTTCACATATGGGTTGTTATTTTGTGCTTGGGCATTGCTTCTATGGTATGCAAGCATACTTGTGAGGCATCACAAGACAAATGGAGGCAAAGCGTTCACAACAATTATCAATGTCATCTTTAGTGGATTTGCTCTTGGTCAAGCTGCTCCAAACCTTGGTTCCATTGCTAAAGGGCGCGCAGCTGCAGCCAATATAATGAACATGATTGCATCTGCTTCAAGCAATTCCAAAAGGTTGGATGATGGCACTGTTGTGCCACAAGTTGTTGGGGAAATTGAATTTTGTGAGGTCTGCTTTTCTTACCCCTCGAGATCCAATATGATCTTTGAAAAATTGAGCTTCTCAGTTAGTGCTGGGAAGACTATAGCAGTTGTTGGTCCAAGTGGTTCCGGAAAGAGCACGATTGTTTCCCTTATTCAAAGGTTCTATGACCCCACTTCAGGTAAGATCCTGTTGGATGGATATGACCTAAAGAATCTTCAATTGAAATGGTTGAGAGAACAGATGGGCTTGGTTAGTCAAGAGCCAGCACTATTTGCCACAACAATAGCAGGAAATATTTTATTTGGAAAAGAAGATGCAGACATGGATAAAGTCATACAAGCTGCCATGGCTGCAAATGCTCATTCTTTCATTCAAGGATTACCTGATGGTTATCAAACTCAGGTAGGAGAGGGTGGCACCCAACTTTCAGGGGGCCAAAAGCAAAGAATTGCCATAGCAAGAGCAGTGCTCCGAAACCCAAAAGTATTGCTTTTAGATGAGGCCACAAGTGCTCTAGATGCTGAATCAGAGCTCATTGTCCAAAGGGCATTGGAAAAAATAATGTCAAACAGAACAACAATAGTTGTTGCTCATAGACTATCCACCATACGTGATGTAGATACAATTGTTGTATTGAAGAACGGCCAGGTGGTTGAAAGTGGGACTCATATGGAATTGATGTCACATAATGGCGAGTATGTGAATCTGGTGAGTTTGCAGGCATCACAAAACCTCACAGGCTCTAGATCAATATCTCGCTCTGAAAGTTCAAGAAGTTCTAGTTTTAGAGAACCTTCAAACTACATGACCTTAGAGGAGCAGCTGAAGTTGGATACAACATTTGAACAGAAATCAAGTGATCAACACCTGCCATCAAACACTACTACTTCCACTCCAATTCTGGATTTAGTGAAACTGAATGCTCCAGAGTGGCCCTATGCAATACTTGGATCAGTAGGTGCAGTTATGGCTGGAATGGAAGCCCCTCTCTTTGCCCTTGGAATCACTCACATTTTGACTGTGTTTTATTCTCCTCGTGGTTCTATAATCAAGCAAGAAGTTGATAGGGTTGCTTTTATATTTGTTGGAGTGGCTGTCATTACTATACCTATTTATCTATTGTTGCACTACTTTTATACATTGATGGGAGAGCGCCTCACTGCCCGTGTGCGTTTATTAATGTTTTCAGCTATTCTCAACAATGAAGTTGCATGGTTTGATATGGATGAGAACAACACTGGCTCACTAACAGCCATGCTTGCTGCGGATGCAACATTAGTAAGAAGTGCTCTAGCTGACAGACTCTCAACCATTGTGCAAAATGTAGCTCTCACTGTCACAGCTTTTGTTATTGCCTTCACATTGTGCTGGAAACTAACAGCAGTGGTCGTAGCCTGCCTTCCCCTTCTCATAGGAGCTTCTATCACTGAGCAACTATTTCTGAAGGGGTTTGGAGGAGATTATGTCCATACTTACTCTAAAGCAACTTCTTTGGCTCGTGAAGCTATTGCCAACATACGTACTGTTGCTGCTTTTGGTGCAGAAGATCGAATCTCAATCCAGTTTGCATCTGAATTGAACAAACCTAACAAACAAGCACTTCTACGGGGCCACATATCAGGTTTTGGCTACGGCATAACACAGCTGTTGGCTTTCTGTTCCTATGCACTTGGCCTTTGGTATGCATCAGTTTTAATCAAGAAGAAAGAGTCAAATTTTGGAGACATCATGAAGTCCTTCATGGTATTAATTATCACTTCTCTGGCAATAGCAGAAACACTGGCTCTTACCCCAGACATTGTGAAGGGATCACAAGCACTGGGATCAGTTTTCGGCATTCTCCAAAGGAGAACAGCCATCACCCCAGATGACCCCAACTCAAAGATGGTAACTGATATCAAAGGAGATATAGAGTTTAGAAATGTTTCCTTCAAGTACCCTATGAGACCTGATATCACCATATTTCAGAAATTAAACCTCAGGGTCTCAGCAGGTAAGAGTCTGGCAGTAGTGGGGCAAAGTGGTTCAGGGAAAAGCACAGTGATTGCTTTGGTAATGAGATTCTATGACCCCAATTCTGGGTCGGTCCTGATTGATGAATGTGATATCAGAAGCCTGAACCTGAGATCCTTAAGACTGAGAATAGGATTGGTTCAGCAAGAACCTGCTTTGTTCTCTACCACAGTTTATGAAAACATCAAGTATGGAAAAGAGGAGGCATCAGAAATAGAGGTAATGAAGGCAGCCAAAGCAGCAAATGCTCATGAATTCATCAGCAGAATGCCAGAAGGGTACAAAACTGAGGTGGGTGAGAGAGGGGTGCAGTTATCAGGAGGACAAAAACAAAGAGTGGCAATTGCTAGAGCTATTCTTAAAGATCCATCCATTCTTCTGTTGGATGAAGCGACGAGTGCGCTAGACACAGTCTCAGAGAGGCTGGTCCAAGAGGCTCTTGATAAACTTATGGAAGGTAGAACAACAATTTTGGTAGCTCACAGGCTATCGACTGTTCGTGATGCAGACAGCATTGCAGTGCTGCAAAATGGGATGGTTGCTGAAATGGGAAGCCATGAGAGGCTGATGGCGAAACCTGGAAGCATCTACAAGCAATTGGTTAGTCTACAGCAAGAAATGCGTGACTAA 3729 0.4304 MAEVELAPEQGVTSKKDQPTKTESVSFFGLFSAADTTDCVLMFLGSIGSFVHGAALPVFFILFGRMIDSLGHLSNDPHKLSSRISEHALYLVYLGGVVLISAWMGVAFWMQTGERQTARLRLKYLQAVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAIAGGAYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAVGSYSKSLDNALKLGKKGGLAKGVGVGFTYGLLFCAWALLLWYASILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRAAAANIMNMIASASSNSKRLDDGTVVPQVVGEIEFCEVCFSYPSRSNMIFEKLSFSVSAGKTIAVVGPSGSGKSTIVSLIQRFYDPTSGKILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEDADMDKVIQAAMAANAHSFIQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKVLLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTIRDVDTIVVLKNGQVVESGTHMELMSHNGEYVNLVSLQASQNLTGSRSISRSESSRSSSFREPSNYMTLEEQLKLDTTFEQKSSDQHLPSNTTTSTPILDLVKLNAPEWPYAILGSVGAVMAGMEAPLFALGITHILTVFYSPRGSIIKQEVDRVAFIFVGVAVITIPIYLLLHYFYTLMGERLTARVRLLMFSAILNNEVAWFDMDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLCWKLTAVVVACLPLLIGASITEQLFLKGFGGDYVHTYSKATSLAREAIANIRTVAAFGAEDRISIQFASELNKPNKQALLRGHISGFGYGITQLLAFCSYALGLWYASVLIKKKESNFGDIMKSFMVLIITSLAIAETLALTPDIVKGSQALGSVFGILQRRTAITPDDPNSKMVTDIKGDIEFRNVSFKYPMRPDITIFQKLNLRVSAGKSLAVVGQSGSGKSTVIALVMRFYDPNSGSVLIDECDIRSLNLRSLRLRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAAKAANAHEFISRMPEGYKTEVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALDKLMEGRTTILVAHRLSTVRDADSIAVLQNGMVAEMGSHERLMAKPGSIYKQLVSLQQEMRD 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00384 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1237 IPR027417 -
Cca05g00384 1242 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 448 567 - -
Cca05g00384 1242 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 26 467 - -
Cca05g00384 1242 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 545 1237 - -
Cca05g00384 1242 SUPERFAMILY ABC transporter transmembrane region 665 977 IPR036640 GO:0005524|GO:0016021
Cca05g00384 1242 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 339 - -
Cca05g00384 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 601 IPR003439 GO:0005524
Cca05g00384 1242 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524
Cca05g00384 1242 CDD ABC_MTABC3_MDL1_MDL2 366 602 - -
Cca05g00384 1242 Pfam ABC transporter 1018 1166 IPR003439 GO:0005524
Cca05g00384 1242 Pfam ABC transporter 384 532 IPR003439 GO:0005524
Cca05g00384 1242 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 545 1237 IPR039421 -
Cca05g00384 1242 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 26 467 IPR039421 -
Cca05g00384 1242 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 448 567 IPR039421 -
Cca05g00384 1242 CDD ABC_MTABC3_MDL1_MDL2 999 1237 - -
Cca05g00384 1242 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524
Cca05g00384 1242 Gene3D - 990 1242 IPR027417 -
Cca05g00384 1242 SUPERFAMILY ABC transporter transmembrane region 31 339 IPR036640 GO:0005524|GO:0016021
Cca05g00384 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 999 1235 IPR003439 GO:0005524
Cca05g00384 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 602 IPR027417 -
Cca05g00384 1242 Pfam ABC transporter transmembrane region 42 315 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca05g00384 1242 Pfam ABC transporter transmembrane region 678 950 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca05g00384 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 331 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca05g00384 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 964 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca05g00384 1242 CDD ABC_6TM_Pgp_ABCB1_D2_like 667 982 - -
Cca05g00384 1242 Gene3D ABC transporter type 1, transmembrane domain 29 968 IPR036640 GO:0005524|GO:0016021
Cca05g00384 1242 SMART AAA_5 392 578 IPR003593 -
Cca05g00384 1242 SMART AAA_5 1026 1228 IPR003593 -
Cca05g00384 1242 Gene3D - 356 611 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00384 Cca-Chr5 8347520 8353361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00384 7 1238 Calmodulin-binding Proteins AT2G36910 49.563 0.0 1216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00384 K05658 - gmx:100787093 2183.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00384 05 8347520 8353361 Cca05g00384 05 8347520 8353361 ECH