Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00309 ATGTCAAAATCTATGGAACTCCCAGATTGTGTATACCCTAAGCCAGCATTTAGCATTATCCCTCCATGTGCTCCAACACCAAAGCATTCTCTCTACCTATCTAACCTTGACAACCAAAAGTTCCTCAGATTCTCCATCAAGTATGTGTACCTCTTCAAGAAATGTGTGAGCTTGGATGTGTTGAAGTCTTCTCTTTCAAGAGTTTTGGTGGATTACTACCCCTTGGCTGGGAGGTTGAGGAGGAGCAGCAGCATTGTTTGTGAGGATGATGATCACAAGCTTGAGGTGGATTGCAATGGACAAGGTGCTTTCTTTGCTGAGGCTTCCATGGATGCCACTGCTCAAGAGTTACTTGAACTTTGCAAGCTTCCAAATGATTCGTGGAGGAAGCTCTTGTACAAGGTTGAAGCTCAGAGTTTTTTGGATGTTCCTCCTCTTGTAATCCAGGTGACGAGACTCGGATGCGGAGGGATGATCCTGTGCACGGCAATCAACCACTGCCTATGCGACGGCATCGGCACGTCCCAGTTTCTCAAAGCTTGGGCCCACCTCACCCAACACCCCAACGCGGAACTCACAACCCCACCCATCCACACGCGCCACGTGTTGAAGCTTCGAGACCCTCCCCAGGTGCACCTCACCCACCCGCAATACACCCGAATAAACCCCACGCAAGTGGACCTCCACGCGCTAATGTTCTCGCAGCCGCTCGTGCCCACGTCATTCACCTTCGGACCCTCCCAAGTCCTCCGCCTCAAGAACCGCTACGAGCCGTCACCGAAGCGCGTGACGACCTTCGAAGCCGTGGCGGCGCACACGTGGCGCGCGTGGGTGAAGTCACTGAACCCGTGCCCCACGCTGACGGTGAAGCTCCTCTTCTCCGTGAACGTCAGGGAGAAAATGAAGCTCCCCGAAGGGTACTACGGGAACGGGTTCGTGCTAGCGTGCGCCGAGAGCGTCGTGAGGGACCTGGTGGCGGCCGGCAACCTGCGACACGGTTTGGAAATGGTGCAACGCGCTAAGGCGCGTTTGGACGAGGGGCGCGTGTGGTCGATGGTTGATTTGTTGGAGGACGAAACGGTGGGCATCGATTTGTCATCGAGTTTCGTTATTTCGCAGTGGTCGAGGTTAGGGTTAGAGGAGGTGGATTTTGGAGAAGGGAAAGCGTTGCATGTGGGTCCTTTGACGAGTAGTTTTTATTGCTTGATTTTGCCTATCGTCGGAGACCCTCATGCGGTGAGAGTGCTCGTGTCGGTGCCGGAGACTGTCGCCGACACTTTTCGCTATCACATGGCGCTGCAAGAGAGTTTGGCGACTTATTAA 1323 0.5389 MSKSMELPDCVYPKPAFSIIPPCAPTPKHSLYLSNLDNQKFLRFSIKYVYLFKKCVSLDVLKSSLSRVLVDYYPLAGRLRRSSSIVCEDDDHKLEVDCNGQGAFFAEASMDATAQELLELCKLPNDSWRKLLYKVEAQSFLDVPPLVIQVTRLGCGGMILCTAINHCLCDGIGTSQFLKAWAHLTQHPNAELTTPPIHTRHVLKLRDPPQVHLTHPQYTRINPTQVDLHALMFSQPLVPTSFTFGPSQVLRLKNRYEPSPKRVTTFEAVAAHTWRAWVKSLNPCPTLTVKLLFSVNVREKMKLPEGYYGNGFVLACAESVVRDLVAAGNLRHGLEMVQRAKARLDEGRVWSMVDLLEDETVGIDLSSSFVISQWSRLGLEEVDFGEGKALHVGPLTSSFYCLILPIVGDPHAVRVLVSVPETVADTFRYHMALQESLATY 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00309 440 Gene3D - 223 432 IPR023213 -
Cca05g00309 440 PANTHER BNAC03G58010D PROTEIN 18 432 - -
Cca05g00309 440 Pfam Transferase family 19 430 - -
Cca05g00309 440 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 18 432 - -
Cca05g00309 440 SUPERFAMILY CoA-dependent acyltransferases 22 201 - -
Cca05g00309 440 Gene3D - 16 220 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00309 Cca-Chr5 6539227 6543032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00309 18 394 Monolignol Biosynthesis Gene Families AT5G48930 28.571 9.78e-42 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00309 - - gmx:100797134 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00309 05 6539227 6543032 Cca05g00309 05 6539227 6543032 ECH