Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00275 ATGCCTGATGTGTCTGAAGTTCAGAATTTAAGGGAACTGAGACTTGATCATTGTAAACACCTAATAACAATTCATGATTCTGTTGGATATCTTAAAAGGCTTGCTCATTTAAGCGCTTCAGAATGTACCCAACTCAAAAATTTCCCACAAAAGATGTTTCTACCATCTCTTGAAGTTCTCAATCTTAATTTATGTGGAAAGCTTGAACACTTCCCGGAGATAAAGGAAGAAATGAATAAGTCATTGAAGATTTATATGACAAATACTGCTATTAAGGTTCTGCCAGAATCCATTGACAAACTCATTGGGCTTGTCAGTATAGAGATATCAAATAGTAGGAAACTTAAATATCTACCAAGTAGCTTATTCATGTTGCCAAATAATGTTGCCTTTAAAATTGGAGGATGTCGTCAACTCTTAGAATCCTTCAGAAGTTTCGTTCAGAGCCTTTCTACAATTAATGTTTGTCCAATTTTACAAACACTACATTTTGAAAATGCCAATTTGTCAGATGGAGATCTTCTCACGATTCTCAATTGTTTTCCAAAATTAGAAGAGTTATTTGCTTCAAAAAACAAATTTGTCTCACTCCCTACATGCATTAAGGAATGTGTTCACTTAACAAGTCTTGATGTGAGCTTTTGCGAGATGCTTCAAAAGATTCCTGAATGTCCTAACTTGAGAACTCTCAAAGTTAATCATTGCATGAATCTTGAGGAAATTTCAGAATTGCCATTTATTCAAAAAGTAGATGCAAGGCATACCTCTCTAGCTAAGGAGACATCAGACATGTTATGGTTTCAGGCAGCAAAAGGGATGCGTGAATTGGAAATAGTGATGCCCCAAACCGAGATTGCAGAATGGTTTGACTTCATTGGCAACGGAGAGAATCTTCGTTTCTGGGTTCGTTGCAAGTTCCCAACTTTTGCTCTAGCGTTGGTTTTCCAGGATGTGACAGGATGGGGGAGACAAGGTCGCCATCAAATTCTTCAGCTCCAACTAGTTATCAACGGTCGATGTGTTTCTCGCAGAGGCTACAAGTTCAGAATTGGTGCAGATCATGTCTTAATTTGTGATCTACGACTTTTATTCAGTGACGAGGAATGGCTTGGCCTTGATACATTTCTCGAGCATGAGTGGAATGTGGTGCAGGTTTCATATGAAGCCCCGCCCCCGTTGATTCTAAGTCGATGGGGAGTTCATGTGTATGAAGAAGGAGCCAACATGGAACATGTCCAATTCATATGTCCTCATCCCAAGTATTTAGACATGTCACCAACACTGGTTCCTACAAAAGAAGATCCTAAGGAGGAACGAAGAAAGTTGATAGAGAATTTTTGCATAGATGAAGTGCTTGAAGCGACCATACTTGAATACATGCACTACTGCGAGAATAAAAAGGATTTGACAGATGAAAATATGGAGTTAGTGTATTCCAAAATTGGATTGTTGAAAGAGGTAAGTAAGCAGGCTAAGGATGAGTTAAATTCTGGAGACTCAGATTTAGAAGATAAGCATTCCCTCTTGACAACTTTCTTGAAGACTTACTATGCTCTAGGCCCTGAAATTCAGGAGGAAATTGACAATGTTCCGCAGCAGAAAGAAAAAATGAGGAAAATATTCTCTGATGGAATAAGAGATGGGCTTCTTGAAGCAAAGGCTAAATTTCCTTCTCTAAATCTTATCAAAACTAGAAGTGTTGCCTTAAGGAAAGGTAGCAGGGTTCGATGGCTTTTCGAAGAACTACCCGATGTTGTAAAGTTATACATTGGAGGAATCATTAGTGGACTCTCGGAAGCAAAGCTGAACTTTCCTGATTTTGACATGTTGGCAACACTAGTTCCCATGTTACGTATGATAGGCGTAAATGATCTCCATGACAATTTTGGTCGACCATTGATACGGTTGATCAAAGAAGTGAGTGTGGATCTTGGGCAAGAAGCATTAACAAGGTACGTATACTATGATGGAGTTACGGATGGACTTTATGAAGCTCAGAATACCTTTCCTTATCTAGATATTACTGAAACCAGAAGTGTTGCCATAAAAAACATGGCATTTTGGAGCATATTGTTGCTGGGAGAGGATCTGGTACGGGTGCTACGCACGGTTGAAACAAGGACATACATAGATGGAATTCTTGGTGGACTCGTTGAAGCAATGCGGAGCTTTCCTGATTTGGACATCATAAAGATTCTAAGTGTCGTGTTACGTAGGATGGGCATTTTCAAAGTAATTACTATAGAAGATGAGGCGCCTGGTAATTTGCCCCATAAGGATCTCACATTGATGGGAGTGCTAGAAGATAAATGGGAGGAATCAATGGACGTGGGAGAAGCTTCAACCTCTGGGCATCAGGGAAGAGAGGAGGAACAAGGCAACGATCCTCAACAGGAAAAAATACTGAGGGAAATATTCTATGAAGGAATTACAGATGCACTTGTTCAAGCACGGAGTAACTTTCCTTCTTTGGATATTAATAAAACCAGAAGTGCTGCATTGAACGCCAAGATATACGGTCATAGGGCTGTATGGTCACTCTCAGAACCGGAAGGTGGATGGAAGTCACATCTCTCAATTAAAAAGAAGATATACATTGAAGGAGTTATGAATGGACTCCTTGAAGCAAAGTTGAGCTTTCCTAATTTGGACATATGGGCAACACTAAATACCTTGAATAGTAGAAAATTGAAAACATCTTTTGTAACAATACCTAGGTTTATAAAGTTGGATTGGAATAAAGAGATACCTCCTTCTCTAGGCTCTCTTGACCCTCCCTTGCAAACATCCACCACAATGAATCAACAAAGTTCGAAATCTGAGGCCGAGAGTAAATTCCCTTTCAAGTTAGAGGGACAGGAAGCATTGGGTAACAAGTTTGTAAAACATGAAAATGAAGGTGCTGTTTCGAATAAAGATAGTGGCACGACCAGCTCTTGCAAAAACCAATATGATGAACCGATTCAGAAATTCAACACTCAATCTGACGAGTTTGTTTCAAAGAAGGTGGATTGTACTAGTGCCACAGGGATTCTCATGGACAATGGCTGCAAGTGTGAGAGCAAGTATGAGAAGGTGAGTGCTATTTTGAAAGGAAGAGCTGAAGAATTAGGGAGCCTATATCATGCTAGAATTGAAAGTTTCCAGAAGTCGGAGGAGTTTCACGATCTGATGATTGCAACATACTTGAATGGACAGAGAGATGGAGTCCTTGAAGCACAAGCCATCTTATTACTTCCTCAAGACATGGACACAAAAACTCCAGTATTTTTGGATAATGAGGAGCATGTTATTGATGAGGTTGCTAAAAATGAAAAACTTGATGAAGACCTCAGTGTAACAGGTATTCCAATTCCTACTGTTCCAGATGTTCCCAATGACAATGCCAATCTTGACACAAATAACCCTTCTGGCTCAAAGGAATTTTTCAATTGGTTTGAATTTGTTTAA 3450 0.3942 MPDVSEVQNLRELRLDHCKHLITIHDSVGYLKRLAHLSASECTQLKNFPQKMFLPSLEVLNLNLCGKLEHFPEIKEEMNKSLKIYMTNTAIKVLPESIDKLIGLVSIEISNSRKLKYLPSSLFMLPNNVAFKIGGCRQLLESFRSFVQSLSTINVCPILQTLHFENANLSDGDLLTILNCFPKLEELFASKNKFVSLPTCIKECVHLTSLDVSFCEMLQKIPECPNLRTLKVNHCMNLEEISELPFIQKVDARHTSLAKETSDMLWFQAAKGMRELEIVMPQTEIAEWFDFIGNGENLRFWVRCKFPTFALALVFQDVTGWGRQGRHQILQLQLVINGRCVSRRGYKFRIGADHVLICDLRLLFSDEEWLGLDTFLEHEWNVVQVSYEAPPPLILSRWGVHVYEEGANMEHVQFICPHPKYLDMSPTLVPTKEDPKEERRKLIENFCIDEVLEATILEYMHYCENKKDLTDENMELVYSKIGLLKEVSKQAKDELNSGDSDLEDKHSLLTTFLKTYYALGPEIQEEIDNVPQQKEKMRKIFSDGIRDGLLEAKAKFPSLNLIKTRSVALRKGSRVRWLFEELPDVVKLYIGGIISGLSEAKLNFPDFDMLATLVPMLRMIGVNDLHDNFGRPLIRLIKEVSVDLGQEALTRYVYYDGVTDGLYEAQNTFPYLDITETRSVAIKNMAFWSILLLGEDLVRVLRTVETRTYIDGILGGLVEAMRSFPDLDIIKILSVVLRRMGIFKVITIEDEAPGNLPHKDLTLMGVLEDKWEESMDVGEASTSGHQGREEEQGNDPQQEKILREIFYEGITDALVQARSNFPSLDINKTRSAALNAKIYGHRAVWSLSEPEGGWKSHLSIKKKIYIEGVMNGLLEAKLSFPNLDIWATLNTLNSRKLKTSFVTIPRFIKLDWNKEIPPSLGSLDPPLQTSTTMNQQSSKSEAESKFPFKLEGQEALGNKFVKHENEGAVSNKDSGTTSSCKNQYDEPIQKFNTQSDEFVSKKVDCTSATGILMDNGCKCESKYEKVSAILKGRAEELGSLYHARIESFQKSEEFHDLMIATYLNGQRDGVLEAQAILLLPQDMDTKTPVFLDNEEHVIDEVAKNEKLDEDLSVTGIPIPTVPDVPNDNANLDTNNPSGSKEFFNWFEFV 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00275 1149 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 473 IPR044974 GO:0006952
Cca05g00275 1149 MobiDBLite consensus disorder prediction 777 797 - -
Cca05g00275 1149 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 2 473 - -
Cca05g00275 1149 MobiDBLite consensus disorder prediction 783 797 - -
Cca05g00275 1149 SUPERFAMILY RNI-like 5 259 - -
Cca05g00275 1149 MobiDBLite consensus disorder prediction 921 945 - -
Cca05g00275 1149 MobiDBLite consensus disorder prediction 923 943 - -
Cca05g00275 1149 Gene3D Ribonuclease Inhibitor 81 266 IPR032675 -
Cca05g00275 1149 Gene3D Ribonuclease Inhibitor 1 80 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00275 Cca-Chr5 5906012 5915626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00275 1 139 WRKY Transcription Factor Family AT4G12020 38.129 3.62e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00275 - - ccaj:109789614 2307.72