Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00271 ATGTTTCATCTCTGGAGCAATTCTTCTCAACAAGACCAGGAAAGCAGCGAGCTTTATGCTGAAGACAAGATTAAAGAGCTGAAGGGTGCAATTGGACCCTTGTCAGGACGCAGTTTGATGTATTGCTCTGATGCTTGTTTGAGGAGATATTTGGAAGCTCGAAATTGGAATGTAGACAAGGCCAAGAAGATGTTGGAGGACACACTCAAGTGGAGATCAAATTATAAGCCAGAGGAAATTCGCTGGCCTGAGGTTGCAATGGAAGGGGAGACTGGGAAATTGTACAGAGCAAGCTTTCATGATAGGCAAGGAAGGACTGTTCTTATTTTGAGACCTGGAATGCAGAACACTGCTTCAATGGAGAATCAGATGAGGCATCTTGTGTATCTTTTGGAAAATGCCATGCTTAATCTTCCACCAGGTCAAGAACAGATGGCATGGTTGATAGACTTCACTGGTTGGTCATTGACCAACAATGTGCCCCTTAAATCAGCCAGAGAGACCATCAACATTTTGCAGAACCATTATCCTGAGAGGCTTGCCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGATAGTTAAGTATTTCTTGGATAGCAAGACTTTTCAAAAAGTGAAATTTGTCTACCCGAAAAATAAAGATAGTGTGGAGCTCATGAAGTCATATTTTGATGAGGAAAACCTTCCCAAAGAACTAGGTGGAAAAAGCATAATGAGTTATAACCATGAGGAGTTCTCCAGATTAATGATTCAGGATGATTTGAAGTGTGCAGCATTTTGGGGTTCTGATGAGAAGCTCTCAAACCACATTGCTAAGGGGCATTCTGCTGCAGCAGTTTGCAATGAAACTCCAGGGACCTGA 879 0.4221 MFHLWSNSSQQDQESSELYAEDKIKELKGAIGPLSGRSLMYCSDACLRRYLEARNWNVDKAKKMLEDTLKWRSNYKPEEIRWPEVAMEGETGKLYRASFHDRQGRTVLILRPGMQNTASMENQMRHLVYLLENAMLNLPPGQEQMAWLIDFTGWSLTNNVPLKSARETINILQNHYPERLAIAFLYNPPRVFEAFWKIVKYFLDSKTFQKVKFVYPKNKDSVELMKSYFDEENLPKELGGKSIMSYNHEEFSRLMIQDDLKCAAFWGSDEKLSNHIAKGHSAAAVCNETPGT 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00271 292 PANTHER GH16843P 7 288 - -
Cca05g00271 292 SMART sec14_4 88 243 IPR001251 -
Cca05g00271 292 SUPERFAMILY CRAL/TRIO N-terminal domain 21 83 IPR036273 -
Cca05g00271 292 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 82 246 IPR001251 -
Cca05g00271 292 PANTHER RANDOM SLUG PROTEIN 5-LIKE 7 288 - -
Cca05g00271 292 CDD SEC14 100 241 IPR001251 -
Cca05g00271 292 Pfam CRAL/TRIO domain 93 240 IPR001251 -
Cca05g00271 292 Pfam CRAL/TRIO, N-terminal domain 28 67 IPR011074 -
Cca05g00271 292 Gene3D - 4 274 IPR036865 -
Cca05g00271 292 SUPERFAMILY CRAL/TRIO domain 82 253 IPR036865 -
Cca05g00271 292 SMART CRAL_TRIO_N_2 43 68 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00271 Cca-Chr5 5753438 5755531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00271 47 235 Acyl Lipid Metabolism Gene Families AT1G55840 28.641 2.85e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00271 - - aprc:113847293 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00271 05 5753438 5755531 Cca05g00271 05 5753438 5755531 ECH