Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00269 ATGGCACTTCTTCTTCTTTCCTTGCTTCCACTGTTTCTCACTCTTAACCTCGCAAGTTCCGAATCGTTCATcggcgtcaactacggccaagtcgccgacaacctgccgccggcgacggcgacggcgaagctgctccagtcgacggcgatcggAAAGGTCCGGTTGTACGGAACCGACCCGGCGATAATAAAAGCCCTGGCGAACACGGGAATCGGAATCGTGATCGGAGCGGCGAACGGCGACATTCCGGGACTGGCCTCGGACCCAAACTTCGCGAAAACGTGGGTGAGCACGAACGTGGTTGCGTACTACCCGGCGAGCAACATCATCCTGGTGACGGTGGGCAACGAGGTGATAACCTCGAACGACCAGGGGCTGGTGGTCCAGATGCTGCCGGCGATCCAGAACGTGCAGAACGCCCTGGACGGCGCCGGTCTCGGCGGGAAGATCAAGGTGTCCACGGTGCACTCCATGGCGGTGCTCCGGGACTCCGAGCCTCCCTCCGCCGGAAGGTTCCACCCCGAGTTTGATTCCGTTTTGCAGGGGCTCTTGTCGTTTAACAATGCCACGGGTTCTCCCTTTGCCATCAACCCTTATCCTTACTTTGCCTACCGAAGCGACCCTGGCAGAGCCGATAACCTTGCCTTCTGCCTTTTCCAGCCCAACGCCGGACGAGTTGACTCCAACACCAACATCAAGTACATGAACATGTTCGATGCTCAGGTGGATGCAGTTCGATCTGCTTTGGATGCTTTGGGGTTTAAGAATGTTGAGATTGTGGTTGCGGAGACAGGGTGGCCCTACAAAGGAGACAACGATGAGGCTGGTCCAAGTCTTGAGAATGCTAAGGCTTACAACGGTAACCTCATTGCGCACCTGCGATCCATGGTTGGGACCCCTTTGATGCCAGGGAAATCAGTGGACACGTACCTCTTCGCCTTGTACGATGAGGACTTGAAGCCTGGATCTGCTTCTGAGAGAGCCTTTGGTCTTTTCAACCCTGATCAAACCATGATCTATGATGCTGGCCTCTCCAAGCAGCAACAAACCACTAGCCCCGTGCCTACGGTTGCCCCGACTCCGGAAGTGTCAAAATCTCCAGTGATTCCAGCACCAACAGACCCGGGTCAGACATCAAAATCTCCGGTGGTTCCAGCGAGAACAGGCCCGGGTCCAACGCCAAATAAAGCAGAAATCTTGAGTGGACATGAAGCCACCATTTTGCAATCTTTAATCATGTTCACAGTTCTCATCTTAGTGCTGTTCTAG 1269 0.5067 MALLLLSLLPLFLTLNLASSESFIGVNYGQVADNLPPATATAKLLQSTAIGKVRLYGTDPAIIKALANTGIGIVIGAANGDIPGLASDPNFAKTWVSTNVVAYYPASNIILVTVGNEVITSNDQGLVVQMLPAIQNVQNALDGAGLGGKIKVSTVHSMAVLRDSEPPSAGRFHPEFDSVLQGLLSFNNATGSPFAINPYPYFAYRSDPGRADNLAFCLFQPNAGRVDSNTNIKYMNMFDAQVDAVRSALDALGFKNVEIVVAETGWPYKGDNDEAGPSLENAKAYNGNLIAHLRSMVGTPLMPGKSVDTYLFALYDEDLKPGSASERAFGLFNPDQTMIYDAGLSKQQQTTSPVPTVAPTPEVSKSPVIPAPTDPGQTSKSPVVPARTGPGPTPNKAEILSGHEATILQSLIMFTVLILVLF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00269 422 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 11 356 IPR044965 GO:0004553|GO:0005975
Cca05g00269 422 Gene3D Glycosidases 23 352 - -
Cca05g00269 422 MobiDBLite consensus disorder prediction 345 393 - -
Cca05g00269 422 PANTHER GLYCOSYL HYDROLASE FAMILY 17 PROTEIN 11 356 - -
Cca05g00269 422 SUPERFAMILY (Trans)glycosidases 24 342 IPR017853 -
Cca05g00269 422 MobiDBLite consensus disorder prediction 345 359 - -
Cca05g00269 422 Pfam Glycosyl hydrolases family 17 24 341 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00269 Cca-Chr5 5684319 5688145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00269 1 378 Glycoside Hydrolase AT5G42720 61.845 5.95e-173 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00269 - - gmx:100802287 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00269 05 5684319 5688145 Cca05g00269 05 5684319 5688145 ECH