LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g00260	ATGCACCACCTTCTACTCTTTGCGATCCTGGTTCTGCTTCTAGTGTTAGCATCAAGAGTTGCATATTCAACAATTTGGGTCCCATGGAACATTGCACGTCACTTTCGTAAGCAAGGCATAAGGGGACCCTCGTACCGTCTGATCAAAGGGAACACGGAGGAGATCCACGGCATGTATGCGGAAGTTCAATCGAAGCCAATGGCGTTGTGCCACGACACCCTGGAGCGCGTGTGTCCATTCTACCACAGGTGGTCGCGCATGTATGGGAAAACTGTTCTGTACTGGCACGGGTCGAAGCCGAAAGTGGTACTATCCGACCCGGATATGATTAAGGAGATACTTGTGAAAACGGGTGACGGGTTTGAGAGGCCGGATCCGAATCCGTCGACGAAACAGTTTTTTGGAGAAGGAATATTGGTGATTAAAGGAGAACAATGGGGTGTGCATAGAGCAATTGCTAACCAGGCTTTTAAAATGGAGCGGGTCAAGTCTTGGATTCCACGAATTGTAGATAGCACAAAAACAATGTTATACAAGTGGGAAGATGAGAACAAAGGCATTGATGAATTTGAAATTGAAGTGAGTAAAGATCTCCATGATCTTACATCTGATATTATATCCAAAGTCGCTTTTGGTAAGATTTTTGAGTTACTAGAACAGCATTATCATCTGGTCACCCTTTCCATCAGAAGTGTTTATTTTCCTGGGTTCAGGTTTCTACCTACTAAGAAGAACAAAGAAAGAAAGAGACTAGAGAAGAAAACCAGTGAATTAATTCGAGGGTTGATTGAGGATAGTCATAAATCAGAACAAAATTCAGAAAATTTGCTTTCTTTGTTGATGTCTTCTCACAAATTTATCAACAATGAGACTCATAAGTTAAGATTGGACGAGATAGTGGATGATTGTAAAAACTTTTATATGGCAGGAAAGGAAACAAGTGCAACTTCATTAAGTTGGGCACTCCTCCTTTTAGGGATAAATCAAGAATGGCAAAGCAAGGCACGTGAGGAGGTACTTGGAGTTTTAGGACCTAATGCTCTCCCAACATCAGAAACATTAAGTGAACTAAAACTTATGAACCTGATACTTCAAGAAACACTTCGACTCTACCCTAATCCTGGGGCATTGGTAAGGCAAGCAAGTAAAAGAGTTCAGCTAGGGAACATTGATATTCCTGCTGGTACACAACTGTATTTATCTATCACATCCACTCATCGTGATACTGAGTTATGGGGAGAAGATGCTCTTGAATTCAATCCTATGAGATTTGTTGAGCCTCGAAAAAATTTAGCTCCATATTTTCCCTTTGGATTAGGTCCTAACTACTGTGTGGGTCAAAATTTAGCTTTGGTTGAAATGAAAGTTGTACTAGCCATGGTGCTACAGAGGTATTCTTTTGTTGTATCACCGACATATGTGCATGGGCCAATGCTGTTGATGAGTGTGATACCTCAATATGGCATGCAAATTATCTTTAGAAGATTATGA	1491	0.4118	MHHLLLFAILVLLLVLASRVAYSTIWVPWNIARHFRKQGIRGPSYRLIKGNTEEIHGMYAEVQSKPMALCHDTLERVCPFYHRWSRMYGKTVLYWHGSKPKVVLSDPDMIKEILVKTGDGFERPDPNPSTKQFFGEGILVIKGEQWGVHRAIANQAFKMERVKSWIPRIVDSTKTMLYKWEDENKGIDEFEIEVSKDLHDLTSDIISKVAFGKIFELLEQHYHLVTLSIRSVYFPGFRFLPTKKNKERKRLEKKTSELIRGLIEDSHKSEQNSENLLSLLMSSHKFINNETHKLRLDEIVDDCKNFYMAGKETSATSLSWALLLLGINQEWQSKAREEVLGVLGPNALPTSETLSELKLMNLILQETLRLYPNPGALVRQASKRVQLGNIDIPAGTQLYLSITSTHRDTELWGEDALEFNPMRFVEPRKNLAPYFPFGLGPNYCVGQNLALVEMKVVLAMVLQRYSFVVSPTYVHGPMLLMSVIPQYGMQIIFRRL	496

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca05g00260	496	SUPERFAMILY	Cytochrome P450	74	494	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Cca05g00260	496	Gene3D	Cytochrome P450	26	495	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Cca05g00260	496	PANTHER	CYTOCHROME P450 FAMILY 709 PROTEIN	2	491	-	-
Cca05g00260	496	Pfam	Cytochrome P450	81	472	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Cca05g00260	496	PRINTS	E-class P450 group I signature	318	344	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Cca05g00260	496	PRINTS	E-class P450 group I signature	434	444	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Cca05g00260	496	PRINTS	E-class P450 group I signature	444	467	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Cca05g00260	496	PRINTS	E-class P450 group I signature	298	315	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Cca05g00260	496	PRINTS	E-class P450 group I signature	85	104	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Cca05g00260	496	PRINTS	E-class P450 group I signature	109	130	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca05g00260	Cca-Chr5	5534239	5537679	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca05g00260	22	496	Cytochrome P450	AT1G75130	48.454	6.89e-169	484

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca05g00260	-		-	gmx:100789281	825.083

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca05g00260	05	5534239	5537679	Cca05g00260	05	5534239	5537679	ECH

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