Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00260 ATGCACCACCTTCTACTCTTTGCGATCCTGGTTCTGCTTCTAGTGTTAGCATCAAGAGTTGCATATTCAACAATTTGGGTCCCATGGAACATTGCACGTCACTTTCGTAAGCAAGGCATAAGGGGACCCTCGTACCGTCTGATCAAAGGGAACACGGAGGAGATCCACGGCATGTATGCGGAAGTTCAATCGAAGCCAATGGCGTTGTGCCACGACACCCTGGAGCGCGTGTGTCCATTCTACCACAGGTGGTCGCGCATGTATGGGAAAACTGTTCTGTACTGGCACGGGTCGAAGCCGAAAGTGGTACTATCCGACCCGGATATGATTAAGGAGATACTTGTGAAAACGGGTGACGGGTTTGAGAGGCCGGATCCGAATCCGTCGACGAAACAGTTTTTTGGAGAAGGAATATTGGTGATTAAAGGAGAACAATGGGGTGTGCATAGAGCAATTGCTAACCAGGCTTTTAAAATGGAGCGGGTCAAGTCTTGGATTCCACGAATTGTAGATAGCACAAAAACAATGTTATACAAGTGGGAAGATGAGAACAAAGGCATTGATGAATTTGAAATTGAAGTGAGTAAAGATCTCCATGATCTTACATCTGATATTATATCCAAAGTCGCTTTTGGTAAGATTTTTGAGTTACTAGAACAGCATTATCATCTGGTCACCCTTTCCATCAGAAGTGTTTATTTTCCTGGGTTCAGGTTTCTACCTACTAAGAAGAACAAAGAAAGAAAGAGACTAGAGAAGAAAACCAGTGAATTAATTCGAGGGTTGATTGAGGATAGTCATAAATCAGAACAAAATTCAGAAAATTTGCTTTCTTTGTTGATGTCTTCTCACAAATTTATCAACAATGAGACTCATAAGTTAAGATTGGACGAGATAGTGGATGATTGTAAAAACTTTTATATGGCAGGAAAGGAAACAAGTGCAACTTCATTAAGTTGGGCACTCCTCCTTTTAGGGATAAATCAAGAATGGCAAAGCAAGGCACGTGAGGAGGTACTTGGAGTTTTAGGACCTAATGCTCTCCCAACATCAGAAACATTAAGTGAACTAAAACTTATGAACCTGATACTTCAAGAAACACTTCGACTCTACCCTAATCCTGGGGCATTGGTAAGGCAAGCAAGTAAAAGAGTTCAGCTAGGGAACATTGATATTCCTGCTGGTACACAACTGTATTTATCTATCACATCCACTCATCGTGATACTGAGTTATGGGGAGAAGATGCTCTTGAATTCAATCCTATGAGATTTGTTGAGCCTCGAAAAAATTTAGCTCCATATTTTCCCTTTGGATTAGGTCCTAACTACTGTGTGGGTCAAAATTTAGCTTTGGTTGAAATGAAAGTTGTACTAGCCATGGTGCTACAGAGGTATTCTTTTGTTGTATCACCGACATATGTGCATGGGCCAATGCTGTTGATGAGTGTGATACCTCAATATGGCATGCAAATTATCTTTAGAAGATTATGA 1491 0.4118 MHHLLLFAILVLLLVLASRVAYSTIWVPWNIARHFRKQGIRGPSYRLIKGNTEEIHGMYAEVQSKPMALCHDTLERVCPFYHRWSRMYGKTVLYWHGSKPKVVLSDPDMIKEILVKTGDGFERPDPNPSTKQFFGEGILVIKGEQWGVHRAIANQAFKMERVKSWIPRIVDSTKTMLYKWEDENKGIDEFEIEVSKDLHDLTSDIISKVAFGKIFELLEQHYHLVTLSIRSVYFPGFRFLPTKKNKERKRLEKKTSELIRGLIEDSHKSEQNSENLLSLLMSSHKFINNETHKLRLDEIVDDCKNFYMAGKETSATSLSWALLLLGINQEWQSKAREEVLGVLGPNALPTSETLSELKLMNLILQETLRLYPNPGALVRQASKRVQLGNIDIPAGTQLYLSITSTHRDTELWGEDALEFNPMRFVEPRKNLAPYFPFGLGPNYCVGQNLALVEMKVVLAMVLQRYSFVVSPTYVHGPMLLMSVIPQYGMQIIFRRL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00260 496 SUPERFAMILY Cytochrome P450 74 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00260 496 Gene3D Cytochrome P450 26 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00260 496 PANTHER CYTOCHROME P450 FAMILY 709 PROTEIN 2 491 - -
Cca05g00260 496 Pfam Cytochrome P450 81 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00260 496 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00260 496 PRINTS E-class P450 group I signature 434 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00260 496 PRINTS E-class P450 group I signature 444 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00260 496 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00260 496 PRINTS E-class P450 group I signature 85 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00260 496 PRINTS E-class P450 group I signature 109 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00260 496 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00260 496 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00260 496 PRINTS P450 superfamily signature 435 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00260 496 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00260 496 PRINTS P450 superfamily signature 444 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00260 496 PANTHER CYTOCHROME P450 FAMILY MEMBER 2 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00260 Cca-Chr5 5534239 5537679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00260 22 496 Cytochrome P450 AT1G75130 48.454 6.89e-169 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00260 - - gmx:100789281 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00260 05 5534239 5537679 Cca05g00260 05 5534239 5537679 ECH