Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00247 ATGGCCCTAAACCCAAACTCAAAAACCTCTATACTCTTCCACATGCTCCTCTTTATATTAGGAGGTAACGTAGCATCTGCCGCAGTGTTTATCCTCGAAAACCATTGCACTCAAACAGTTTGGCCGGGGATATCCGGCAACGGCGCCGCCACTCTCGGCGGGGGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGCGGCGGTTTCACCCTGCAGCCCGGTTCGGCGGTTAACCTCACCGCACCGTCGGGCTGGTCAGGCCGCATCTGGGCCCGGACCGGGTGCAGCTTCGACGGCTCCGGCAACGGGAAATGCGTCACGGGAGACTGCGCCGGAGGACTAAAATGCACCGGGTCAGGCGTCCCGCCGGCGACGCTGGCGGAGTTTACCATCGGAAACGACGGTTTTGACCTTTACGACGTGAGTCTAGTGGACGGTTACAACGTGGGGATGAGTGTGCAGGCTACCGAAGGGTGCGGGGCCACGGGGTGCGCGGCGGACCTGAACGCCGCGTGTCCGGCGGAGCTGCAGGTGAGGGACGGCGGCGGCGCGGTGGTGGCGTGCAAGAGCGCGTGCACGGCGTTCAACACGGCCGAGTATTGCTGCACCGGCGATTACTCGTCGCCGGGCACGTGTCCGCCGACGCGTTACTCGGATTTTTTCAAAAGCGCTTGTCCCTTGGCTTATAGTTACGCTTTCGATGAGGATGGTTTCGACCTTGGCGCCTGTCTTCGATCTGATTACATCATCACCTTTTGCCCCATCTCCTTGTACTAG 882 0.5204 MALNPNSKTSILFHMLLFILGGNVASAAVFILENHCTQTVWPGISGNGAATLGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGFTLQPGSAVNLTAPSGWSGRIWARTGCSFDGSGNGKCVTGDCAGGLKCTGSGVPPATLAEFTIGNDGFDLYDVSLVDGYNVGMSVQATEGCGATGCAADLNAACPAELQVRDGGGAVVACKSACTAFNTAEYCCTGDYSSPGTCPPTRYSDFFKSACPLAYSYAFDEDGFDLGACLRSDYIITFCPISLY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00247 293 ProSiteProfiles Thaumatin family profile. 27 289 IPR001938 -
Cca05g00247 293 PIRSF PR5 92 292 IPR001938 -
Cca05g00247 293 PIRSF PR5 1 67 IPR001938 -
Cca05g00247 293 PANTHER PATHOGENESIS-RELATED PROTEIN 5-RELATED 101 290 - -
Cca05g00247 293 Pfam Thaumatin family 100 289 IPR001938 -
Cca05g00247 293 ProSitePatterns Thaumatin family signature. 136 151 IPR017949 -
Cca05g00247 293 SUPERFAMILY Osmotin, thaumatin-like protein 99 289 IPR037176 -
Cca05g00247 293 SMART tha2 101 289 IPR001938 -
Cca05g00247 293 PANTHER OS03G0233200 PROTEIN 101 290 IPR001938 -
Cca05g00247 293 PANTHER OS03G0233200 PROTEIN 9 57 IPR001938 -
Cca05g00247 293 Gene3D Thaumatin 28 289 IPR037176 -
Cca05g00247 293 PANTHER PATHOGENESIS-RELATED PROTEIN 5-RELATED 9 57 - -
Cca05g00247 293 CDD TLP-PA 29 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00247 Cca-Chr5 5270627 5272975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00247 102 289 Receptor kinase-like Gene Family AT5G38280 43.434 1.50e-48 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00247 - - gmx:100808305 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00247 05 5270627 5272975 Cca05g00247 05 5270627 5272975 ECH