Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00243 ATGAATCATGTTGCATTTCTCTTCACACTAACCTTTGTTCTTCTTTCTTTGAATGCCAAAGCACAGCAGAATTACTCTGGGGATTCAGTATTCAGCTGCAAGAACAATGACACAATGGGGCCTTCACCTTCCTTCCTTTACACATGCAATGGCCTCAACAAATCCTGCATGGCCTTCCTCATCTTCAAATCCAAACCTCCCTTCAACTCCATACCCACAATTTCTAACCTCACATCATCAAACCCAGAAGAGCTTGCAAGGATCAATGATGCCACTATGCTCACTGTGTTCCCACCTGGGAAAGAGGGTTTGGTCACTTGTGATTCCCTCAAACGTGCTAATCCATATGGGGTACTTGATTTGAAGCCTGGCATGGAATTGTATGCGCCACTCAGATGTGCTTGTCCAACGTGGAATCAGACAAGAAGTGGCACCAAGTATTTGCTAACGTATTCAGTGAACTTGGGTGATGACATTTCAAGTATTGCTACAAGGTTCAATGTAGCTGCAGGTAGTGTGGTTGATGCCAATGGTTTTTCCACACAAACACAAGTTATTTTTCCACTCACAACTGTTCTGATTCCTTTGCCAAGTGAACCGTTGAGTTCGATGACCACAGTTGTTAGTGATCCACCAACCGTGTCACCTCTTCCTGTTTGCAGCTCCAAAAAGTGCAAGTCAAAGAGGAAACTCTACATTGCTATTGCCACCACAGGAGGTTCCATGCTGGTTCTCTGTGTTGTCTTATATGGGGTTTATCTGTTCAGAAAGAGATCACCGAGTTTCATTGAGAAAGGCAAAGAAGGTAAGAAAACAAAGCAGTTGACTTCAGAAGATATCCGTGGGGAGATAGCAATCATTGAACATCACTCCGAAGTGTACAAGTTTAAGGAAATAAAGAAGGCCACCGAAAACTTTTGTTCAAAGAATAGAATTAAAGGTTCGGTGTTTCGTGGGGTATTTGGTAATGGCAGGAACACATTGGCTGTCAAAATAATGAGAGGAGATGGGTCAAAGGAAGTGAATTTGCTGAAGAGGATCAATCATTTCAACCTGATAAAGCTGCAAGGTTATTGTGAAAACGATGGTTGCCACTATCTTGTTTATGAGTATATGGAAAATGGCTCTTTGAGAGAATGGCTAAGAGAAAACAGGTCCACGGAGAACCAGTGTTTAGCTAATAGGATCCAGATTGCTCTGGATATTGCCAATGGTCTACAGTATCTTCACAACTTCACAGAACCTTGCTATGTGCACAGGAATATTAACAGTGGAAACATCCTACTGAACAAAGATCTAAGAGCCAAGATAGCAAATTTTGCTCTTGCTGAAGAATCAGACAGGAAAATAACTTCAGGTTATACCTCGCCACATGTCGCTATGTCAAGTAGATATATAGCTCCAGAGTATCTGGAGGCAGGGATTGTCACTACCAAAATGGATGTTTATGCCTTCGGGGTGGTGCTGCTGGAATTGATCACGGGAAAAGATTATGTTACCCTGCAAGATGGAAGAGAAGTAATGCTTCATGCAATCAAAGTAAATCTCATTGGTGAAGAGAATGGAGAAGAGAAGGTGAGTTTGTTCATTGATCCTAGCCTCACAGGAAACAGTGAGAAAGCATGCGTTCTCCAGCTAGTTAAACTGGGTCTAGCCTGCTTGATCCAAGAACCGAAAGAGAGACCACACATGGTAGAGGTAGTCTCTAGCTTATTGAAAATATATACAGGTTATATGGACCAAATAATACCACCTAGCATCGACAACAGTGTTGACCTGGAGTGGTGA 1788 0.4239 MNHVAFLFTLTFVLLSLNAKAQQNYSGDSVFSCKNNDTMGPSPSFLYTCNGLNKSCMAFLIFKSKPPFNSIPTISNLTSSNPEELARINDATMLTVFPPGKEGLVTCDSLKRANPYGVLDLKPGMELYAPLRCACPTWNQTRSGTKYLLTYSVNLGDDISSIATRFNVAAGSVVDANGFSTQTQVIFPLTTVLIPLPSEPLSSMTTVVSDPPTVSPLPVCSSKKCKSKRKLYIAIATTGGSMLVLCVVLYGVYLFRKRSPSFIEKGKEGKKTKQLTSEDIRGEIAIIEHHSEVYKFKEIKKATENFCSKNRIKGSVFRGVFGNGRNTLAVKIMRGDGSKEVNLLKRINHFNLIKLQGYCENDGCHYLVYEYMENGSLREWLRENRSTENQCLANRIQIALDIANGLQYLHNFTEPCYVHRNINSGNILLNKDLRAKIANFALAEESDRKITSGYTSPHVAMSSRYIAPEYLEAGIVTTKMDVYAFGVVLLELITGKDYVTLQDGREVMLHAIKVNLIGEENGEEKVSLFIDPSLTGNSEKACVLQLVKLGLACLIQEPKERPHMVEVVSSLLKIYTGYMDQIIPPSIDNSVDLEW 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00243 595 ProSiteProfiles Protein kinase domain profile. 257 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00243 595 ProSiteProfiles LysM domain profile. 149 194 IPR018392 -
Cca05g00243 595 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 5 103 - -
Cca05g00243 595 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 102 580 - -
Cca05g00243 595 Pfam Protein tyrosine and serine/threonine kinase 338 571 IPR001245 GO:0004672|GO:0006468
Cca05g00243 595 Gene3D Transferase(Phosphotransferase) domain 1 372 582 - -
Cca05g00243 595 SUPERFAMILY Protein kinase-like (PK-like) 290 571 IPR011009 -
Cca05g00243 595 Gene3D LysM domain 138 206 IPR036779 -
Cca05g00243 595 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 5 103 - -
Cca05g00243 595 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 102 580 - -
Cca05g00243 595 Gene3D Phosphorylase Kinase; domain 1 266 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00243 Cca-Chr5 5151699 5153600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00243 4 574 Receptor kinase-like Gene Family AT2G23770 35.714 5.29e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca05g00243 PK_Tyr_Ser-Thr 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00243 - - gmx:100806221 899.042