Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00240 ATGCGGAGAGAGCAACCCCAGTCTCCTTGCCTAACTGATGTGGAACCAGACAGACTCAGTTGCTTACCAGGACACATAATAGACCAAATTCTGTCACATTTGTCAATTAGAGAAGCAGTGAGAACAAGTGTTTTGTCTAGCAAATGGAGGTACAAATGGGCCATGCTGCCGAATCTTGTGTTCGATAAGGAATGTGTCACTGTGGCTTCTCAGGACCATATGATTATCAAGAGCAAGCTTTTGAGAATTATAGATCATGTACTGCTACTCCATTCTGGGCCAATCAACAGGTTCAAGCTCTCCCACCGCGATCTCATTGGTGTGGCTGATATTGATCGATGGACACTTCATCTATGCAGAAAGTCTATTAAAGAGTTTGTGCTGGAAATCTGGAAGGGCCAACGCTATAAGATACACTCGTGTTTGTTTTCTTGTCAAAGTTTGACACATTTAGAATTATTTAATTGTTGGCTTAAACCTCCATCAGCATTTCAAGGCTTCAAGAACTTGAAGAGTCTCGATCTGCAACATGTTACCTTGGCTCAAGATGTTTTTGAAAACTTGATAACCAGCTGCCCTCTGCTTGAACGGTTGACATTGATGAACTTTGATGGTTTCAGTCATCTTAATATTGATGCTCCGAATCTCCTGTTTTTTGACATTGGAGGTAAATTTGAGGATATCAGCTTTGAGAATACTTTCCAGTTAGCTGTGGTATCCATCGGTTTGTATTTGAATTTCGAAATCAATCAAAGTAGATTCCATGGAAGTTCTAGCAATATGCTAAATTTTTTTGTTCACCTGCATCACGTACAAAGGCTAGAGGTTCAAAGCTATTTTTTAAAGTATTTGGCAGTGGGGGTTGTGCCAATAAAGCTTCCAAGACCTTGCATGGATCTAAGTTATCTTTCAATACGAATGAACTTCAATGATTCGAAGGAAATTTCAGCTGCTCTTTGCCTCTTAAGAAGCTCGCCTAATCTACAAGAACTAGAAATATTGGCTCGAACTGAGGAGCAGACTGTTCTGTCACACACATGTTGGGAAGACGTGTATTTGAGTTGTCCAGTCATGCAACTGCGATATGTGAAGATAGATGGTATATCTGGTATCAAACGAGAATTAGATTTTATCTACTTTCTGCTTCTATACTCACCTGTGCTAGAAAGGATGACTGTGAAACCTGTTTCAAACGTGGGATCAGAACTGATGAAAGAACTCTTGCGGTTTAGAAGAGCCTCAGGACGAGCTGAAATTATTTACTTGGAATGCTAA 1275 0.4024 MRREQPQSPCLTDVEPDRLSCLPGHIIDQILSHLSIREAVRTSVLSSKWRYKWAMLPNLVFDKECVTVASQDHMIIKSKLLRIIDHVLLLHSGPINRFKLSHRDLIGVADIDRWTLHLCRKSIKEFVLEIWKGQRYKIHSCLFSCQSLTHLELFNCWLKPPSAFQGFKNLKSLDLQHVTLAQDVFENLITSCPLLERLTLMNFDGFSHLNIDAPNLLFFDIGGKFEDISFENTFQLAVVSIGLYLNFEINQSRFHGSSSNMLNFFVHLHHVQRLEVQSYFLKYLAVGVVPIKLPRPCMDLSYLSIRMNFNDSKEISAALCLLRSSPNLQELEILARTEEQTVLSHTCWEDVYLSCPVMQLRYVKIDGISGIKRELDFIYFLLLYSPVLERMTVKPVSNVGSELMKELLRFRRASGRAEIIYLEC 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00240 424 Pfam F-box domain 19 51 IPR001810 GO:0005515
Cca05g00240 424 SUPERFAMILY RNI-like 118 333 - -
Cca05g00240 424 PANTHER F-BOX PROTEIN-LIKE 13 391 - -
Cca05g00240 424 Pfam Leucine Rich Repeat 169 193 IPR013101 -
Cca05g00240 424 ProSiteProfiles F-box domain profile. 16 64 IPR001810 GO:0005515
Cca05g00240 424 SUPERFAMILY F-box domain 16 63 IPR036047 GO:0005515
Cca05g00240 424 SMART 9598neu4hmm 354 422 IPR006566 -
Cca05g00240 424 Gene3D Ribonuclease Inhibitor 95 417 IPR032675 -
Cca05g00240 424 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 13 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00240 Cca-Chr5 5113463 5116464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00240 14 216 EF-hand Containing Proteins AT5G41840 25.110 9.05e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00240 - - gmx:100782183 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00240 05 5113463 5116464 Cca05g00240 05 5113463 5116464 ECH