Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00143 ATGATGGGCATGGCTGTGGAGTTCCTAAGGAATAACGATAATAATAATGCGAGTGCGGTGCAGGAAGCGGCTTCTGCGGCCATCCACAGCGTCGAGAAACTCGTCAACATGATTTCCAACAAGAAGGAACCGGAACTGGAAGAGGTTGCTGACGTGGCGGTGAACCGCTTCAGAGAGGTTATTTCGCTGCTCGATAGGCCTCGCATCGGTCACGCTCGTTTCCGAAGGGCCCCCGCAACAGCGCCACCTGTCCCCGTTTTTCAGTTGCACCAAACGCTCGCGGTTCATGATCATCATCATGCCAAACGCCTCACAGAACAAAAACTAAAAACCTCTGCTTTCAAGGTTTATTCTCCTcctcagcctcagcctcagcctcagcctcagcctcagAATCACCAAAAGGAACAAGCTTTTACCAACTCCTACGTTTCTACGTTAACGGGAGACACGGAGACTTTGCAACGCTCTTCGGGGTTTCAGTTTCCTAAACCGCCACTTTCTTCGACTTCTCTCAAGAGGAAGTGCAACTCCACGGCTTTTCCTCATCTCAAGTGTGGACCCTCCTCTTCGCACTGCCATTGCTCCAAGAAAAGGAAATTGAGGTTGAAGAGAGTGATTAGAGTGCCAGCGATTAGTTCCAAGACTGCTGATATACCACCTGATGAATATTCCTGGAGGAAATATGGACAGAAACCAATCAAGGGTTCTCCTCACCCGAGGGGTTATTACAAGTGTAGCAGTGTGAGAGGTTGCCCAGCACGGAAACATGTGGAGCGTGCTGTCGATGATTCCAACATGCTGGTTGTCACCTACGAAGGAGATCACAATCACTCGCTCACTGCTCCTGAGGTGGCCAGTACTGTCCTTCAATCATCTTAG 882 0.4762 MMGMAVEFLRNNDNNNASAVQEAASAAIHSVEKLVNMISNKKEPELEEVADVAVNRFREVISLLDRPRIGHARFRRAPATAPPVPVFQLHQTLAVHDHHHAKRLTEQKLKTSAFKVYSPPQPQPQPQPQPQNHQKEQAFTNSYVSTLTGDTETLQRSSGFQFPKPPLSSTSLKRKCNSTAFPHLKCGPSSSHCHCSKKRKLRLKRVIRVPAISSKTADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDSNMLVVTYEGDHNHSLTAPEVASTVLQSS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00143 293 Pfam Plant zinc cluster domain 173 218 IPR018872 -
Cca05g00143 293 SUPERFAMILY WRKY DNA-binding domain 216 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g00143 293 Pfam WRKY DNA -binding domain 222 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g00143 293 Gene3D WRKY domain 206 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g00143 293 SMART WRKY_cls 220 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g00143 293 MobiDBLite consensus disorder prediction 116 136 - -
Cca05g00143 293 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 135 IPR044810 GO:0003700
Cca05g00143 293 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 139 293 IPR044810 GO:0003700
Cca05g00143 293 ProSiteProfiles WRKY domain profile. 215 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g00143 293 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 139 293 - -
Cca05g00143 293 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 13 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00143 Cca-Chr5 3321236 3323221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00143 4 278 WRKY Transcription Factor Family AT2G24570 41.587 1.41e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g00143 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00143 - - gmx:100786245 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00143 05 3321236 3323221 Cca05g00143 05 3321236 3323221 ECH