Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00122 ATGGCCAACGCAGAGAACAACACGCACTCTTCTTCTTCTTCTGAAATATGCGATCATCTTCGTCCCTACAAGAAGAGACGCTACGTTTTGCATGGCTTCACCAACGTTGCCACGTCGAAAAAATCTGTATTACAATTTCAAAAACCCGTACCCATGTTAAAGAACCCTCGACCATTGCGTGATCGTTGCGTTTCTGATATTTACGAATACCTACGTTGGATCGAGATAGATCCTACTAGGGCACCCTCACCTAATTATATTGAGAAAGTTCAGTGCGATATTAGTGCTTACACGAGGGCTATTGTTGTGGGTTGGTTGGTGGAGAAGACCGACAAATACGAACTTGTTTCGGATGTGCTCTATTCTAGTGTTGCTTATTTGGATAGGTTTCTATCCTTCAATAATACGCCCATAGACAAGATGCTATTGCTTGGACTTTCTTCCTTGCTTGTTGCTTCAAAATATGAAGATAGGAGGGCACTTACTATTGAGGACCTTCGTTACATTGCGGGTTACTCATGCTCTAATCAGGAGGTTGTGAACATGGAAGCTGATATATTGAAGGTTTTGAAGTTTGAATTGGGTTCTCCTACTGTGAACACATTCTTAACGAGATTCGTTACGGTTGGTCAAGAGGATATTGATGTAAGTTAA 654 0.4159 MANAENNTHSSSSSEICDHLRPYKKRRYVLHGFTNVATSKKSVLQFQKPVPMLKNPRPLRDRCVSDIYEYLRWIEIDPTRAPSPNYIEKVQCDISAYTRAIVVGWLVEKTDKYELVSDVLYSSVAYLDRFLSFNNTPIDKMLLLGLSSLLVASKYEDRRALTIEDLRYIAGYSCSNQEVVNMEADILKVLKFELGSPTVNTFLTRFVTVGQEDIDVS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00122 217 Gene3D - 82 195 - -
Cca05g00122 217 Gene3D - 66 214 - -
Cca05g00122 217 PANTHER CYCLINS 59 214 IPR039361 -
Cca05g00122 217 SMART cyclin_7 104 188 IPR013763 -
Cca05g00122 217 Pfam Cyclin, N-terminal domain 66 194 IPR006671 -
Cca05g00122 217 CDD CYCLIN 98 187 IPR013763 -
Cca05g00122 217 SUPERFAMILY Cyclin-like 62 194 IPR036915 -
Cca05g00122 217 ProSitePatterns Cyclins signature. 99 130 IPR006671 -
Cca05g00122 217 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 59 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00122 Cca-Chr5 2770390 2771408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00122 64 216 Core Cell Cycle Gene Families AT1G47210 49.020 2.18e-47 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00122 K06627 - ccaj:109792661 428.328