Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00121 ATGGCAGAAGCAGCCACCAACGCTCGTCCCCAACGCGAAGCCAAGAAGAGAGCCGCAGCTGCAATATGCGAATTGCAAACCGCCACTAAGAAGAAACGCGTCGTTTTGGGAGACCTCACCAATGTCTCCAACGCGGTCGCCGCACCGGAGCAACGTGTTTCGAAGATTCAAAAACAGGAAAAAGTGAAAGTAGAGAAAACGACGCCGTTGGAAGCCACGCCGGAGAGCACAGACGACAGAACCGACCCTCAATTGTGTATACCTTACGCTTCGGATATACTCGAATACCTTCGCAGCTTGGAGATGGATTTTCGAAAGAGACCTTTGCCTGACTACATACAGAAGATTCAAAGAGATGTTAATTCTAGTATGCGAAGTGTGTTGGTTGATTGGTTGGTGGAAGTTGCTGAGGAATATAAACTTGTGTCGGACACTCTGTATTTATGTATTGCTTATATTGATAGATTCTTGTCGTTGAATGCTTTGTCCAGACAAAGACTGCAATTGCTTGGGGTTGCTGCCATGCTTGTTGCTTCTAGGAAATATGAAGAGATTAAGCCGCCTGAGATTGAGGACTTTTGTTACATTACGGATAACACATACTCTAAGGAGGAGGTTGTCACCATGGAAGCTGATATATTGAAGGCTTTAAAGTTTGAATTGGGTGGACCTACGGTGAAGACATTTTTAAGGAGATTCTCTAGAGTTGGTCAAGAGGGTGTTGATGCTTCTGATCTCCATTTTGAGTTCCTTAGCTGCTATCTTGCCGAGCTCAGTTTGTTGGATTACAATTGTGTAAAGTTCTTGCCATCTATGGTGGCTGCATCTGTTATATTTTTAGCCAGATTTATTTTAAGGCCAAAGACACATCCTTGGAATTCAGGGCTCCATCAACTCACTAGATACAAATCTGCTGACTTGAAGGAATGTGTTCAAAACGTACATGACTTGTACCTCAGTAGGAAAGGGGGTTCTTTGCAAGCTGTGAGAGAGAAATACAAACAACATAAGTTTAAGTGTGTGGCAACAACACCATCTCCTCCCGAGATACCTCTTTCTTATTTTGAATATTCAGGGACAGATTCTTAG 1089 0.4353 MAEAATNARPQREAKKRAAAAICELQTATKKKRVVLGDLTNVSNAVAAPEQRVSKIQKQEKVKVEKTTPLEATPESTDDRTDPQLCIPYASDILEYLRSLEMDFRKRPLPDYIQKIQRDVNSSMRSVLVDWLVEVAEEYKLVSDTLYLCIAYIDRFLSLNALSRQRLQLLGVAAMLVASRKYEEIKPPEIEDFCYITDNTYSKEEVVTMEADILKALKFELGGPTVKTFLRRFSRVGQEGVDASDLHFEFLSCYLAELSLLDYNCVKFLPSMVAASVIFLARFILRPKTHPWNSGLHQLTRYKSADLKECVQNVHDLYLSRKGGSLQAVREKYKQHKFKCVATTPSPPEIPLSYFEYSGTDS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00121 362 Pfam Cyclin, N-terminal domain 92 221 IPR006671 -
Cca05g00121 362 SUPERFAMILY Cyclin-like 224 349 IPR036915 -
Cca05g00121 362 SMART Cyclin_C_2 224 347 IPR004367 -
Cca05g00121 362 MobiDBLite consensus disorder prediction 58 81 - -
Cca05g00121 362 Pfam Cyclin, C-terminal domain 224 346 IPR004367 -
Cca05g00121 362 SMART cyclin_7 228 316 IPR013763 -
Cca05g00121 362 SMART cyclin_7 130 215 IPR013763 -
Cca05g00121 362 MobiDBLite consensus disorder prediction 58 78 - -
Cca05g00121 362 CDD CYCLIN 224 315 IPR013763 -
Cca05g00121 362 ProSitePatterns Cyclins signature. 125 156 IPR006671 -
Cca05g00121 362 PANTHER CYCLINS 20 358 IPR039361 -
Cca05g00121 362 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 20 358 - -
Cca05g00121 362 Gene3D - 108 222 - -
Cca05g00121 362 Gene3D - 92 343 - -
Cca05g00121 362 SUPERFAMILY Cyclin-like 81 221 IPR036915 -
Cca05g00121 362 PIRSF Cyclin_A_B_D_E 2 354 IPR039361 -
Cca05g00121 362 CDD CYCLIN 124 214 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00121 Cca-Chr5 2756091 2759701 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00121 1 356 Core Cell Cycle Gene Families AT1G47230 60.221 1.28e-161 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00121 K06627 - gmx:100791691 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00121 05 2756091 2759701 Cca05g00121 05 2756091 2759701 ECH