Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00108 ATGAGGGACAAGGACAAAGAAAAAGAGACAGAGAAGAAGTACCCTATCGGCGCCGAGCATTACCTTCTCTACGAGGAGATTGGCCAAGGCGTAAGCGCTTCCGTGCACCGAGCGCTATGCATTCCCTTCAACAAGGTCGTCGCCATCAAAATCCTTGACTTCGAACGTGACAATCGCGATCTCAACAACGTTTCTCGTGAGGCCCAGACCATGATCCTCGTCGATCACCCTAACGTCCTCAAATCGCACTTCTCCTTCGTCGCCGAGCACAATCTTTGGGTGGTTATGCCATTCATGGCCGGCGGTTCATGCCTCCACATATTGAAAGTCGCTTTGTGA 339 0.5162 MRDKDKEKETEKKYPIGAEHYLLYEEIGQGVSASVHRALCIPFNKVVAIKILDFERDNRDLNNVSREAQTMILVDHPNVLKSHFSFVAEHNLWVVMPFMAGGSCLHILKVAL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00108 112 Gene3D Phosphorylase Kinase; domain 1 9 98 - -
Cca05g00108 112 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 11 111 - -
Cca05g00108 112 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 11 111 - -
Cca05g00108 112 SUPERFAMILY Protein kinase-like (PK-like) 11 109 IPR011009 -
Cca05g00108 112 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Cca05g00108 112 Pfam Protein kinase domain 24 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00108 112 ProSiteProfiles Protein kinase domain profile. 21 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00108 Cca-Chr5 2570960 2571298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00108 11 111 MAP Kinase Kinase Kinase Kinase AT1G79640 83.168 1.86e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Cca05g00108 Pkinase 1.7e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00108 K08835 - ccaj:109808241 209.149