Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00098 ATGACGAGGATTCTGAGAAGCAATGCGACAAGAGCTAGTAACGACGACGTCAATGGTGCCATAACTGGGAGCGCCAGCGGAATTGAAAATCCCATTCCCGCCGTCGGCGGCCACACTCTAGAAGAAATCTTGGCCGCAATAGAAACCTTGCAACGAGAGAACGAAGAAGAGCGAAGCAGAGAAGGAAGTGTCGTCGCCGGCGACGGAACAGATTTCCCGAATCTCGTCGACGATCCCGCCGCGGATGACCTAATTTCCTGGAACGAAGATGGCACCAGCTTCATCGTTCGGCGACCCGCCGAATTCACACGGGATTTGCTTCCCAAGTACTTCAAACACAACAACTTTTCTAGTTTCGTCCGTCAGCTTAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGACTACTTCCGGCGAGGCAAGAGAGGTCTTCTCCGCGACATACAGCGCCAGAAAATATTGCCGGTACCAGCGGCGGCAACAGTAACCACAGCGAACGCGGTAACGGTGGCGGTGGCGGCACCGGCGGTGAGAACGGTGTCCCCGACGACTTCCAGCGACGAACAGGTACTATCGTCGAACTCATCTCCGATTGATGGGAGTGGGAATAATAATAATACAGTGCACCGCACCACGAGTTGCACCACTGCGGCCGAGCTGTTAGAAGAGAATGAAAGGCTTAGGAAGAAGCGCGGCAGCGAGAAGGTGAAGCCGAACAACTGTATCGACAGAATCACGCGGATATGTATGATCGAGGTCAACCAAAAGGCGTCAAGGAGATGCCATGAGGATAGCATGAGTAAAAAGAAAACATTGAAGGTCACCAAACCTCCATACCAGAGTGGTTCAGAAATATACCAGCAGCAGCTAAGTGCTTTCACAGGGGCAGGGAAATTAAAAGCTAAAGAAAAATCAAAATTTTGTGAAGGCAATAAGCTGAACAACCATGGCAACCTTGGGGCTTTATTGCAGCATCAGCTTACGTGTGAGTCATTCTTCACAATCTCGGGCGCTTTTGAAACAAAGGATTTGGACAAGAGCCCCAAGTTTGGTTTCTCACTCTTGCTCAAAGCCTTCAACCCTTCATGGATTCATGAACTGAGGTAA 1125 0.504 MTRILRSNATRASNDDVNGAITGSASGIENPIPAVGGHTLEEILAAIETLQRENEEERSREGSVVAGDGTDFPNLVDDPAADDLISWNEDGTSFIVRRPAEFTRDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDYFRRGKRGLLRDIQRQKILPVPAAATVTTANAVTVAVAAPAVRTVSPTTSSDEQVLSSNSSPIDGSGNNNNTVHRTTSCTTAAELLEENERLRKKRGSEKVKPNNCIDRITRICMIEVNQKASRRCHEDSMSKKKTLKVTKPPYQSGSEIYQQQLSAFTGAGKLKAKEKSKFCEGNKLNNHGNLGALLQHQLTCESFFTISGAFETKDLDKSPKFGFSLLLKAFNPSWIHELR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00098 374 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 74 237 - -
Cca05g00098 374 Gene3D - 70 158 IPR036388 -
Cca05g00098 374 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 74 237 IPR027725 -
Cca05g00098 374 MobiDBLite consensus disorder prediction 51 72 - -
Cca05g00098 374 PRINTS Heat shock factor (HSF) domain signature 68 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g00098 374 PRINTS Heat shock factor (HSF) domain signature 106 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g00098 374 PRINTS Heat shock factor (HSF) domain signature 119 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g00098 374 Coils Coil 40 60 - -
Cca05g00098 374 Coils Coil 223 243 - -
Cca05g00098 374 MobiDBLite consensus disorder prediction 185 215 - -
Cca05g00098 374 SUPERFAMILY "Winged helix" DNA-binding domain 74 156 IPR036390 -
Cca05g00098 374 ProSitePatterns HSF-type DNA-binding domain signature. 107 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g00098 374 SMART hsfneu3 74 157 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g00098 374 Pfam HSF-type DNA-binding 74 157 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g00098 374 Gene3D Porin 292 364 IPR023614 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00098 Cca-Chr5 2298720 2303608 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00098 75 235 HSF AT4G11660 61.628 5.47e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca05g00098 HSF_DNA-bind 1.4e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00098 K09419 - ccaj:114916880 388.652