Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00078 ATGTACTGTGTACATAAGACGACAATGGGAGTGAAGGCGACGCTGATGCAACTGACCGTGCTGTTGTTGATGGCGTTAGCAGCAGCTGACCAAGCCCTGCCCGGCTGCCCGAGCACTTGCGGAAGCGTTTCAGTTCCGTATCCCTTTGGCATAGGCGTGTCATCTGTCAACGGCAAAAACTGTTTCTTGGAGAGAAATCTGAACCTCACCTGCAAGGGTTCCACTTTATACACCGGTAATGTGGAGGTTATGAATATAGACAACATCAAAGGTCAAATGGACCTGAATTTCTTCGTCGCCAACGTTTGTAAAGTGGGATACGATAACGAATCAACAAAAGGTAACAAACCCAGACTCAAAACCGCGGCTTTTACCATCTCTAGTACGGACAACAAGTTCGTAAGCGTGGGTTGCGACACTTACGGCTATCTCAACAATTTCTTCAACCAAAAGCGATACAGTACCGGATGCGTGACAACATGCGACAGCGAAGAGGACATGTTAAGCATGCAGGGTAATGGAAGCTGCACGGGGATTGGGTGCTGCCACGTGGACATACCTCCTGGTATGAAGAACATTAGCATACGAGCATTCAGCTTTAGCAATTTCAATTCCTCGTCCGACTTCAACAACTGCAGCTACTCCTTTGTTGTCAAAAATCGAAACTACAATTTCTCGATGGATCACTTAAAACATCCACCCTTCCATGATGGCAAGGCTCCCATGGTCGTTGATTGGACTATTGGAAAAAGCACGTGTGAAATTTCAGAGGGTAAATCCAACTACGCGTGTAAGAGTAACAGCGAGTGTGAGAACTCCACCACTGGATCTGGTTACCGATGCAAATGTAAGGAAGGCTACGACGGGAACCCATACCTTACGGAAGGTTGCAAAGATATCGACGAATGCGCGACAAAAAAACATGATTGCACAAGTGACAAAAATTGTCGTAACGAGTACGGACATTTCACATGTTTCTGTCGTAAGTGGCAATCCGGAAATGGAAGAAGGGAAGGGGGCTGCCACGTACGTACCATGGTTGTAGTTGGAGTGGGAATAGGATTTATCATTCCTCTGGTAGGGATTGGCATGCTGTACTTAACATACCAGAAAAGGAAACTCAAAAAACTAAAGGAGAAATTCTTTCAGCAGAATGGCGGCTTGATTTTGCTACAAAAACTCTCTAGAAGAGAAAATACTTCGCAAACCACTCAAATTTTCACAGATGAACAACTAAAGAAGGCCACCAACGACTTTGATGAGAGCAAAATCATTGGCAATGGAGGTTATGGTACAGTTTTCAAAGGGATTCTAGATGATAACAAAATTGTAGCAATCAAGAAGTCCAAAAAAGTTGATGGGAGCCAAAAGGAACAGTTCATTAATGAGGTGATTGTTTTATCCCAAATCAATCATAGGAATGTGGTCAAACTCTTGGGATGTTGTTTAGAGACAGAAATTCCTTTATTAGTGTATGAATTTGTTGAAAATGGTACCCTTTTTGATTTTATACACACCCAAAGAAAGATAAATAGTGAAACTTGGGAAACTCGTCTAAAGATAGCATCAGATGTAGCTGAAGCTCTATCACATCTACACACTGGAGTCTCAATACCCATTATCCATAGAGATGTCAAGACTGCTAACATTCTCTTGGATAAAAATTACACTGGGAAAGTTTCTGATTTTGGAGCTTCAAAATTAATTCCACTTAATCAAACTGAATTGGCCACAATGGTGCAAGGAACTATTGGTTACCTGGACCCCGAGTACATGCTTACAAGCCAACTAACCGAGAAAAGTGATGTTTATAGCTTTGGGGTGGTTCTTATAGAGCTGTTAACAGGGGAGGTACCACATTCTTTTGGAAGGCTTCAGGAGAAAAGAAGTCTTGCTAACCACTTTCTATCTTTCTTGAGAAATAATAGGTTATCTGATGTTGTTCAATTTGGCATTGAGAAAGAAGAAAATAATAAAGATATTATGGAGGTTGCTATTCTTGCTGCAAAGTGCTTGAGAGTTGAAGGGGAGAAAAGGCCTAGCATGAAGGAAGTGGCAATGGAGTTGGAGAGAATAAGGCTAAAGGAGAAGCATCCATGGACTAATACTGACCAAAATCTGGAGGAGACCCAACACTTGCTTTACGAGACATCATCCAACATTTATGAGACTGGTAACAGCAGCAACCATCAATATTCTGGGTATGACAGCATGAAGGATCATGCACTAGTTGCCTTGGATGCTGGACGGTGA 2253 0.4248 MYCVHKTTMGVKATLMQLTVLLLMALAAADQALPGCPSTCGSVSVPYPFGIGVSSVNGKNCFLERNLNLTCKGSTLYTGNVEVMNIDNIKGQMDLNFFVANVCKVGYDNESTKGNKPRLKTAAFTISSTDNKFVSVGCDTYGYLNNFFNQKRYSTGCVTTCDSEEDMLSMQGNGSCTGIGCCHVDIPPGMKNISIRAFSFSNFNSSSDFNNCSYSFVVKNRNYNFSMDHLKHPPFHDGKAPMVVDWTIGKSTCEISEGKSNYACKSNSECENSTTGSGYRCKCKEGYDGNPYLTEGCKDIDECATKKHDCTSDKNCRNEYGHFTCFCRKWQSGNGRREGGCHVRTMVVVGVGIGFIIPLVGIGMLYLTYQKRKLKKLKEKFFQQNGGLILLQKLSRRENTSQTTQIFTDEQLKKATNDFDESKIIGNGGYGTVFKGILDDNKIVAIKKSKKVDGSQKEQFINEVIVLSQINHRNVVKLLGCCLETEIPLLVYEFVENGTLFDFIHTQRKINSETWETRLKIASDVAEALSHLHTGVSIPIIHRDVKTANILLDKNYTGKVSDFGASKLIPLNQTELATMVQGTIGYLDPEYMLTSQLTEKSDVYSFGVVLIELLTGEVPHSFGRLQEKRSLANHFLSFLRNNRLSDVVQFGIEKEENNKDIMEVAILAAKCLRVEGEKRPSMKEVAMELERIRLKEKHPWTNTDQNLEETQHLLYETSSNIYETGNSSNHQYSGYDSMKDHALVALDAGR 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00078 750 Pfam Wall-associated receptor kinase galacturonan-binding 36 90 IPR025287 GO:0030247
Cca05g00078 750 Pfam Protein kinase domain 420 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00078 750 Pfam Calcium-binding EGF domain 299 335 IPR001881 GO:0005509
Cca05g00078 750 Gene3D Laminin 303 340 - -
Cca05g00078 750 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 316 327 IPR000152 -
Cca05g00078 750 ProSiteProfiles Protein kinase domain profile. 419 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00078 750 SUPERFAMILY EGF/Laminin 299 333 - -
Cca05g00078 750 CDD STKc_IRAK 425 692 - -
Cca05g00078 750 Gene3D Transferase(Phosphotransferase) domain 1 495 718 - -
Cca05g00078 750 SUPERFAMILY Protein kinase-like (PK-like) 398 690 IPR011009 -
Cca05g00078 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Cca05g00078 750 SMART serkin_6 419 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00078 750 ProSitePatterns Calcium-binding EGF-like domain signature. 299 325 IPR018097 GO:0005509
Cca05g00078 750 Gene3D Phosphorylase Kinase; domain 1 393 494 - -
Cca05g00078 750 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 720 IPR045274 GO:0007166
Cca05g00078 750 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 20 720 - -
Cca05g00078 750 Gene3D Laminin 252 302 - -
Cca05g00078 750 ProSitePatterns Protein kinases ATP-binding region signature. 425 448 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00078 Cca-Chr5 1713390 1717189 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00078 14 750 Receptor kinase-like Gene Family AT1G21230 44.709 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Cca05g00078 Pkinase 5.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00078 - - gmx:100778914 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01075 03 26135663 26144745 Cca05g00078 05 1713390 1717189 PCT