Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00077 ATGGAAAACTTGCAACTGGGTATGTTGGGTTTAGCCCTGGTAGTAGTAGTAGTAGCTGCTGCACCTGATGAAACCCTCCTAGCTGGTTGCACTTCCACTTGTGGAGATATCAAAGTTCCCTATCCATTCGGTATAGGCTACTCATCCACACATGATCAACAACCTTGTTTCTTGGAAGACGACTTCAATCTCACTTGTGTTGTGCCCAAAGTGTGTGGGTATCCTCCAAAGTCCCACCGGTCAGTTTATGATAACAAAAACAATCCCTCGATGACAACAGCTGCTACTTTCAGCATTTCAAGGACAGAAAACAAGTTCCTGACTGTCGGCAACGACAGTTATGGCTATCTGAATAGCGTTTTCAACGATGAAACTTATTCAACAGGGTGCTTAACGAGATTTTATGACAACGATGTGGGGATTGATTATGGAACATGTTCGGGAATAGGGTGTTGCCAGGTCGAAATTCCTCCTCGTATGAGGAATATCAGTATAGAAGCATTGAACTTCCCCGATTCAACAAATTACCAGGGCTGCACCTATTCCTTTGTTGTCAAACAAGGCTCCTATAGTTTTTCTACCTCTCATTTAACCAGTTTTCCAAACAAGACGCTTCCTTTGGTTCTTGATTGGAGCCTAGGAGAAAATAATTGTACTAGTTTTGAGAGCAACAGAGGAGAGTACGCGTGCAAGGAGAATAGCCATTGCAACGACACAGACACTGACTTTGGTTACCGATGCACATGTGATCATGGATATGAAGGAAACCCATATCTTGGCTGCACAGATATTTTGGAATGTTCGACCAGAGAACACAATTGTATAAGTGAACAAAATTGTAGAGAAATCCCTGGGTCTTTCCGATGTTTCTGTCTTGAAGGACAAATCGGAGATGGAACAAAAGAAGGCGGAGGATGCCAACCAAAGCACCGAGATGATGTATTTATGAAGGTCGCCATTGGTGTAGGTGTAGGATTAATTGCACTATTTATGGGGACTTCTTGGTTGTACTTGATATATGAAAAAAGGAAATTCCTCAAATTAAAAGAGAAGTTCTTTCAACAAAATGGGGGCCTCATTCTAAAACAACAACTTTCTACAAAAGAAGGCTTATCTCGCCTTCCTACAATTTTCACAGGCGAGGAACTTAAGAAAGCCACTAACAATTTTGATGAGGACTTCATCATTGGTAAAGGTGGATTTGGTACAGTTTTCAAAGGATTTCTCTCAAAGAACAAGATTGTCGCTATCAAAAAGTCCAAAATAGTGGATCAGAGTCAAGTTGAACAATTCATTAATGAGGTCATTGTACTATCACAAATTAATCATAGGAATGTGGTCAAACTCTTAGGTTGTTGTTTAGAGACAGAAGTTCCTTTGCTAGTCTATGAATTTGTTAACAATGGTACCCTTTTTGATTATTTACACAATGAAGGCCAAGCAGCTAATGTATGTTGGAAAACTCGTTTAAGGATAGCAACAGAAGCAGCTGAAGCTCTATCTTATCTACACTCAGCAGCTTCGATACCCATCATCCATAGAGATGTGAAGACTGCTAATATACTCTTAGATGACAATTACATTGCCAAAGTGTCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAACTGAGTTGGCCACAATTGTGCAAGGAACTATTGGCTATTTGGACCCAGAGTACATGCAAACAAGCCAATTGACAGAAAAAAGTGACGTATATAGCTTTGGGGTAGTGCTTTTAGAAATTCTAACAGGGGAGAAACCTTTCTCTTTTGCCCGCTCAGAAGAAAAACGAAGTCTTACAATTCACTTTCTATCTTGCTTGAAAGAGGATTGCCTGTTTAAAGTTCTTCAAGTGGGTATTTTGGATGATGAAAACAAACAGGAGATCATGGAGGTTTCTATTCTTGCTGCCAAGTGTTTGAGACTTAAAGGGGAGGAAAGACCAAATATGAAGGAAGTGGCAACGGAGTTGGAAGGAATAACACGAATGGGGAAACACTCAAGGAATAATGAAACCCAAAATTTTGAGGAGAATCAATACCTACTTCATGAGACATATAACACTTGTGAACATGGTGAAAGTAGTAGCCATCAAAATACTGGGTATGATAGCTTGAGAGATGTTGAATTAATTGACTTCGGTGATGCAAGATAA 2163 0.3999 MENLQLGMLGLALVVVVVAAAPDETLLAGCTSTCGDIKVPYPFGIGYSSTHDQQPCFLEDDFNLTCVVPKVCGYPPKSHRSVYDNKNNPSMTTAATFSISRTENKFLTVGNDSYGYLNSVFNDETYSTGCLTRFYDNDVGIDYGTCSGIGCCQVEIPPRMRNISIEALNFPDSTNYQGCTYSFVVKQGSYSFSTSHLTSFPNKTLPLVLDWSLGENNCTSFESNRGEYACKENSHCNDTDTDFGYRCTCDHGYEGNPYLGCTDILECSTREHNCISEQNCREIPGSFRCFCLEGQIGDGTKEGGGCQPKHRDDVFMKVAIGVGVGLIALFMGTSWLYLIYEKRKFLKLKEKFFQQNGGLILKQQLSTKEGLSRLPTIFTGEELKKATNNFDEDFIIGKGGFGTVFKGFLSKNKIVAIKKSKIVDQSQVEQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFVNNGTLFDYLHNEGQAANVCWKTRLRIATEAAEALSYLHSAASIPIIHRDVKTANILLDDNYIAKVSDFGASRLVPLDQTELATIVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLLEILTGEKPFSFARSEEKRSLTIHFLSCLKEDCLFKVLQVGILDDENKQEIMEVSILAAKCLRLKGEERPNMKEVATELEGITRMGKHSRNNETQNFEENQYLLHETYNTCEHGESSSHQNTGYDSLRDVELIDFGDAR 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00077 720 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 14 695 IPR045274 GO:0007166
Cca05g00077 720 Pfam Protein tyrosine and serine/threonine kinase 396 660 IPR001245 GO:0004672|GO:0006468
Cca05g00077 720 ProSitePatterns Protein kinases ATP-binding region signature. 396 419 IPR017441 GO:0005524
Cca05g00077 720 ProSiteProfiles Protein kinase domain profile. 390 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00077 720 Gene3D Phosphorylase Kinase; domain 1 358 465 - -
Cca05g00077 720 SUPERFAMILY Protein kinase-like (PK-like) 371 660 IPR011009 -
Cca05g00077 720 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 14 695 - -
Cca05g00077 720 Gene3D Laminin 215 304 - -
Cca05g00077 720 SUPERFAMILY EGF/Laminin 263 298 - -
Cca05g00077 720 ProSitePatterns EGF-like domain signature 2. 247 261 IPR000742 -
Cca05g00077 720 SMART serkin_6 390 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00077 720 SMART egf_5 266 307 IPR000742 -
Cca05g00077 720 SMART egf_5 217 262 IPR000742 -
Cca05g00077 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Cca05g00077 720 CDD STKc_IRAK 396 663 - -
Cca05g00077 720 Gene3D Transferase(Phosphotransferase) domain 1 466 689 - -
Cca05g00077 720 Pfam Wall-associated kinase 145 250 IPR013695 GO:0004674|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00077 Cca-Chr5 1676357 1683260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00077 11 720 Receptor kinase-like Gene Family AT1G21230 42.819 1.17e-179 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Cca05g00077 PK_Tyr_Ser-Thr 6.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00077 - - gmx:100785674 1002.28