Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00076 ATGGAACAGTTGCAATTGTGGAAGGTGCTAATTTGTGCATTAGCAGTGGCTATGGTGGTAGCTGCCGCACCTGATCAAACCCTCCCCGGCTGCAATTCCACGTGCGAAGGTGGAAACGTCGAAATTCCCTATCCATTCGGCATAGGCTACTCTTCTACACAACATGGACAACCTTGTTTCTTGGAACCCAAATTCAACCTCTCTTGCAACAACTCCAACTTAATTTACGGCTCCAACGTCACAGCTTTGAGCATAAACGTCACAGCGCATCAAATGGAAGTGTCGTTTTGGGTGGCGCGGTCCTGCAACGAGACGAACGACACCAGCCCGTGGATGAAAACAGCGAATTTCAGCGTTTCAAGGACCGAAAACAAGTTAAGAACTGTTGGCTGCAACAGCTTCGGCTTGCTCGCTGGCGTCTACGACAACAGCACATATGCGACGGGGTGCGTAACGCAGTGTTACGGCAAAGAATTGAAGATCGACGACGGAACGTGTTCGGGTGTAGGGTGTTGCCAGGTGGATATTCCTCCTCGAATGAGGGATATCCGCATAGCAGCAGCTACCTTATCTTCCGACAATTTAACGAGGGACTGGGGAAGGTGTAGTTATTCGTTTGTTGCCAAACACGACTCGTATAAATTTTCTACCGCTGACTTGAAAAGTTTCCCAAACAAGACGCTCCCCTTGGTTCTTGATTGGACCGTAGGAGACAAAAATTGTAGCGGTTTTGAGAGCAACAGAGGAGAGTACGCGTGCAAGGAGAATAGCCATTGCAACGACACAGACACTGACTTTGGTTACCGATGCACATGTGATCATGGCTATCAAGGAAACCCATATCTTGGCTGCACAGACATTGATGAATGTAAGACAGGCAAACATTCATGCATAAGTGAACAACATTGTCACAACACCGATGGATCCCACATATGCTTATGTTTAAAGGGGCAATCCGGAAATGGAACAAAGGGATCAGAAGGGTGCCACGAAAAAGATGTAGTAACTAAGGTTGTCATAGGAGTAGCAGCAACAATTGTTATTCTATTTGTGGTGATTACTTCATTGTACTTGATATATCAAAAAAGGAAACTCATCAAACTTAGAGAGAAATACTTTAAACAAAATGGTGGTTCCATTTTGTTACAACAACTCTCTACAAGAGAAAATTCCCCCCAAATGACTCAAATCTTCACAGAAGAACAACTAAAGAAAGCAACAAACAACTTTGACAATAGCTTAATCATTGGCAGTGGAGGTTTTGGAACAGTTTATAAAGGATTGTTGGAAAATAACATAACTGTGGCTATCAAGAAGTCCAAAATTGTTGATGAGAGCCAAAAGGAACAATTCATTAACGAGGTGGTTGTTTTATCCCAAATCAATCATAGGAATGTTGTCAAGCTTTTAGGATGTTGTTTGGAGAGAGAGGTTCCTTTACTGGTATATGAATTTGTTGAAAGTGGTACCCTTTTCGATTTTCTACACACTGAAAGAAAGATAAATAATGAAACTTGGAAAATGCGACTAAGGATAGCTGCAGAGGCAGCTGGAGCTTTATCATATCTTCACTCTGCAGCCTCAATACCCATTATCCACAGAGATGTCAAAACTTCTAACATCCTATTGGATAAAACTTACACTGCCAAAGTGTCTGATTTTGGAGCTTCAAGGTTGGTTCCAGTTGATCAAACTGAAATAGCCACAATGGTGCAAGGTACTTTCGGTTACTTGGACCCAGAGTACTTGCGTACAAGCCAACTAACTGAGAAAAGTGATGTTTATAGTTTTGGGGTAGTGCTTGTAGAGCTATTAACAGGGGAGAAACCTCATTCTTTTGGCAGGCCAGAAGAAAAAAGAAGTCTTTCTAACCACTTTTTGTCTTGTTTGAAAGAGGATCGTTTATTTGATGTTCTTCAAGTTGGCATTATGAATGAAGAAAATCAAAAAGAGATCATAGAGGTTGCTATTCTTGCCGCAAGCTGCTTGAGACTCAATGGGGAGGAAAGGCCTAGCATGAAGGAAGTCGCAACAGAGTTGGACGCAATAAGGCAAATGGAAAAACACCCATGGATCAATAGAGACCAAAATTTGGAGGAGACCCAATGTTTGCTTCATGAGGCACCATCTAGCATTTATGAACATGGTGATAGCAATAGTCATCAGTATACTGATAGCattagggatcatgtattaatagccttggataatggaagatga 2220 0.4162 MEQLQLWKVLICALAVAMVVAAAPDQTLPGCNSTCEGGNVEIPYPFGIGYSSTQHGQPCFLEPKFNLSCNNSNLIYGSNVTALSINVTAHQMEVSFWVARSCNETNDTSPWMKTANFSVSRTENKLRTVGCNSFGLLAGVYDNSTYATGCVTQCYGKELKIDDGTCSGVGCCQVDIPPRMRDIRIAAATLSSDNLTRDWGRCSYSFVAKHDSYKFSTADLKSFPNKTLPLVLDWTVGDKNCSGFESNRGEYACKENSHCNDTDTDFGYRCTCDHGYQGNPYLGCTDIDECKTGKHSCISEQHCHNTDGSHICLCLKGQSGNGTKGSEGCHEKDVVTKVVIGVAATIVILFVVITSLYLIYQKRKLIKLREKYFKQNGGSILLQQLSTRENSPQMTQIFTEEQLKKATNNFDNSLIIGSGGFGTVYKGLLENNITVAIKKSKIVDESQKEQFINEVVVLSQINHRNVVKLLGCCLEREVPLLVYEFVESGTLFDFLHTERKINNETWKMRLRIAAEAAGALSYLHSAASIPIIHRDVKTSNILLDKTYTAKVSDFGASRLVPVDQTEIATMVQGTFGYLDPEYLRTSQLTEKSDVYSFGVVLVELLTGEKPHSFGRPEEKRSLSNHFLSCLKEDRLFDVLQVGIMNEENQKEIIEVAILAASCLRLNGEERPSMKEVATELDAIRQMEKHPWINRDQNLEETQCLLHEAPSSIYEHGDSNSHQYTDSIRDHVLIALDNGR 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00076 739 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524
Cca05g00076 739 Pfam Calcium-binding EGF domain 286 323 IPR001881 GO:0005509
Cca05g00076 739 SMART egf_5 289 330 IPR000742 -
Cca05g00076 739 SMART egf_5 240 285 IPR000742 -
Cca05g00076 739 ProSiteProfiles EGF-like domain profile. 286 324 IPR000742 -
Cca05g00076 739 SUPERFAMILY Protein kinase-like (PK-like) 389 680 IPR011009 -
Cca05g00076 739 Gene3D Transferase(Phosphotransferase) domain 1 486 706 - -
Cca05g00076 739 Gene3D Laminin 244 323 - -
Cca05g00076 739 SMART serkin_6 410 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00076 739 Gene3D Phosphorylase Kinase; domain 1 377 485 - -
Cca05g00076 739 Pfam Protein kinase domain 415 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00076 739 SMART egfca_6 238 285 IPR001881 GO:0005509
Cca05g00076 739 SMART egfca_6 286 330 IPR001881 GO:0005509
Cca05g00076 739 PIRSF SRK 64 149 IPR024171 GO:0004674
Cca05g00076 739 PIRSF SRK 163 728 IPR024171 GO:0004674
Cca05g00076 739 CDD STKc_IRAK 416 683 - -
Cca05g00076 739 Pfam Wall-associated kinase 165 273 IPR013695 GO:0004674|GO:0016021
Cca05g00076 739 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247
Cca05g00076 739 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 16 710 - -
Cca05g00076 739 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 16 710 IPR045274 GO:0007166
Cca05g00076 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Cca05g00076 739 SUPERFAMILY EGF/Laminin 286 321 - -
Cca05g00076 739 ProSitePatterns EGF-like domain signature 2. 270 284 IPR000742 -
Cca05g00076 739 ProSiteProfiles Protein kinase domain profile. 410 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00076 Cca-Chr5 1645570 1649431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00076 14 739 Receptor kinase-like Gene Family AT1G21230 45.027 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Cca05g00076 Pkinase 6.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00076 - - gmx:100781051 1138.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00076 05 1645570 1649431 Cca03g01070 03 25913823 25916531 PCT