Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00075 ATGGAGGGCAAGATAGAGACTGCAGACAAAAAGGTACTGGTTGATATTGTAAAATTGGCACAAAAAAGAGGCCTGAAGGGTAAACTGGGAGGCTGGAAAGAATTCTTGAACAGTTATGACAAAAAGTTTGGGGCAAGTATGAGTGATCCATCAAAGAGATCCCATGAGATATTGGCTGCATTTCTGAATACATTTTCAAAGGAGGAAGATTTGAAGTTTTTTGATAACATCATGCGACATCATTCAAATCAATACACATTGGAGAAACTGAAAGACAAATCTCATGATTCTCCTGAGCAGAGGCTGGTCCAACTAACTCTGCAGCATCCATTATATCCATTGGATTATTCATTTTCATCCATTGATGAGGAGTGGATAGTTATAAACCTTAAAAACAAATCTAAGGTGATGAAGTCTACTGCAATGGTTGCTGTTGACTGTGAAATGGTTCTCTGTGAGGATGGGACTGAAGCGTTAGTTAAAGTCTGTGTGGTAGACCATAATTTAGAGGTCAAACTAAATCAACTTGTAAAACCCGACAAGGAAATTGCAGACTACAGAACAGAAATCACTGGTATCTCTTCTCAAGATCTAGAGGCAGTGACTTGCTCCTTGGCTGATATACAGAAATCCATGAAGAAATTGTTACCAAAAGGAACCATATTAGTGGGACACAGTTTGCATAGTGATTTACGTGTGCTGAAGCTTGATTATGTTAGAGTGGTTGACACTGCATATATCTTCCAATCATTGGATGGATCTATTCACAGGAGACCTTCTTTGAATAGATTATGTCAGGCAGTGTTGGGCCATGAAGTTCGGGAAAAGGGTGCTCCACATAATTGTCTAGATGATGCACGTGCAGCTATGAATCTTGTTCTTGCGAGGATCAAACATGGAGTCGATAGGGAATTTCCAATTCCATTGATTGAAGAGCATGTTTCAGAAAGTGAAATGGCAAAGCTTCTTCTTCACAAGATACCAAACACTGTAGACAATGAAACACTGCATAAAATTGTTCTCGGAGACTTCAAAATAGAAGTGAAGCCTTCCAGGAAAGGTCAAGGAGAATATTATACTGCCTTGGCTGTTTTTAGAAACCAGCAAGAGGCAGATGATGCCTATGAAAATGTCCAAGGAAGCAAATTAAAGGATACAAATGGACTTCCACAAAAACGTGTAACATTTAGGCTGAGTTCAGGCATGACTGTCAATATATTTGTTCGGAAAATGGCTACCAATGAACCCAATGACCGTACTCCATCTAAGAGGGCTTTACAAATGGATGAGGCAGTTGATGCTTCCAAGAAAGCAAAGATGGATCCAAAAATTGAAGAGGATGCCCTGACAAGCTTTGGCAAGGGTGACACTGAGGCCCATTTGAATGAGATTGAAGAACTGAATCAAAGATTGAAGCAAAGTGAGATGGAGATTGAATCATTGAGGAAACAGTTGACACAAAAGGATTTTGAAATTACCATGTTGCATAAATTGGTATCCTCCTTAAAAAAGCGATAG 1518 0.3939 MEGKIETADKKVLVDIVKLAQKRGLKGKLGGWKEFLNSYDKKFGASMSDPSKRSHEILAAFLNTFSKEEDLKFFDNIMRHHSNQYTLEKLKDKSHDSPEQRLVQLTLQHPLYPLDYSFSSIDEEWIVINLKNKSKVMKSTAMVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLNQLVKPDKEIADYRTEITGISSQDLEAVTCSLADIQKSMKKLLPKGTILVGHSLHSDLRVLKLDYVRVVDTAYIFQSLDGSIHRRPSLNRLCQAVLGHEVREKGAPHNCLDDARAAMNLVLARIKHGVDREFPIPLIEEHVSESEMAKLLLHKIPNTVDNETLHKIVLGDFKIEVKPSRKGQGEYYTALAVFRNQQEADDAYENVQGSKLKDTNGLPQKRVTFRLSSGMTVNIFVRKMATNEPNDRTPSKRALQMDEAVDASKKAKMDPKIEEDALTSFGKGDTEAHLNEIEELNQRLKQSEMEIESLRKQLTQKDFEITMLHKLVSSLKKR 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00075 505 Gene3D - 137 305 IPR036397 GO:0003676
Cca05g00075 505 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 8 430 - -
Cca05g00075 505 Coils Coil 454 491 - -
Cca05g00075 505 CDD REX1_like 143 294 IPR034922 -
Cca05g00075 505 SMART exoiiiendus 141 302 IPR013520 -
Cca05g00075 505 Pfam Exonuclease 143 292 IPR013520 -
Cca05g00075 505 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Cca05g00075 505 PANTHER SMALL RNA DEGRADING NUCLEASE 2 8 430 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00075 118 273 C2H2 Transcription Factor Family AT3G27970 30.939 4.48e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00075 K14570 - gmx:100785565 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00075 05 1609188 1614732 Cca05g00075 05 1609188 1614732 ECH