Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00073 ATGGAAATTCCTCTCCCTTCATACGTTGTGGTTGCATGTGATGCCACGAAAGATCGCAATGAGCACGAGATCAAGCATGTCGTTGATCGCCTTCGAAGAAGGGGTGACATTCTCTCTGCAAGTCATAGTCTGCTTGTGCTTGGTGCCTTGCATAAGGTGCCTCACCCAATGGGGTACCAGACACTAGCATGCCCGGAGTCCTTTGCTGGCGCCAATATTCGTGCAATGGAGGAAGAAGTTAACAGAAAAGTTGAGGCATATAAAAGTGTGCTTGCAACAAGTTATCAACAACATGAAAACAAAGGGGTCAGCAGAATCGAGGTTAAAATCACTGCAGGTTTTCCAATTAGACAGGTTATTATACAAGAGGTTACGAACTATAATCCATCTTGGGTTATTCTTGATAGACATCTTCGACGTGACTTGAGATTTTACAAGAACAAGATATCATGTAGAATTGGATTGGTTAAAGATGACTTGTCACTGGATATTTGGAGATCTCATCATATAACTGAAATAGAAGTCACCGAACAAAAGCTTATTTATTCTTTGAACAAGAGTGTTTCACTATCAGGTTCTCAAAGTATTCGAGATGAAGAGCAATCTATCATGGTTTGCAAAAGTTATCCTCCTTCCATTACTTCTGAAAGCTCTAATATGTCAAAGAGAAATATCAAACATTCAAATGCTAATAAGTTAGAAGATCACAATTCTTCAACAGATTTTCGATCTTCTTCAAGCATAAGCATTAATGAAGAATATAAGCATCCCATTGGTTCTCAAATTTACCAAAAGCAAAGCATATATAGCTTTTTACCAAATTCTTCAAATGCTCCAATTCTTTGTACTTCTTGTGGGACACAAACTGCATTATATACCAATGACTTGAAAAGGTTCAGCTATTCTGAGATACAACATGCAACAAATGATTTTTCAAAAGAAAACTTACTAGGTGAAGGTGGATATGGCCATGTATATAAAGGAATGCTTAAAAATGGGCAGCAAATAGCTGCTAAGGTAAGGAAAGAAGAAAGCAAACAAGGGTTTTCTGAATTCAATTCTGAAGTTTACGTGTTAAATTTCGCTCGGCACAAGAATATAGTGATGCTTTTGGGTTATTGTTTCAAAGAAAGGCTAAATATTTTGGTATATGAATATATTTGCAACAAGTCTCTTGATTGGCATTTATTTGACATTTTTGCAGATAAAAATGCTGCAGTTCTCGAATGGCACCAAAGATATGCTATTGCCATTGGAACTGCAAAAGGATTGCGTTTTCTACATGAGGAATGTCGTGGAGGCCCTATAATTCATCGTGACATGAGACCAAGCAATATACTCCTCACTCATGATTTTGTTCCCATGGTAGGTGACTTTGGTCTTGCTAAATGGAAGACTAGTGATAAGACTCTACACACAAGAATAATGGGCACATTAGGATACCTTGCCCCCGAGTATGCCGAAGACGGTATTGTTTCTGTGCTAATAGATGTGTATGCTTATGGCATTATTCTGTTACAATTGATAACAGGACACAAGGCAACTTCTAGTCCAGAGCAACATCTCTCCCTACGACAATGGGCTGAGCCCAAGATTGAGAAGTTAGAATTTCATGAACTTATAGATTCTCGTCTAGGGGATTCATATGACTCAAATGAGCTATATATCCTGGCCAAGGTAGCATATTACTGCGTGCAAAGAGATCATAAGAAACGCCCGTCTATTGGAGAGGTTGTGCGCTGTCTTGAAGGACGAAAAGACGTTTTCTATTCCATTAATGCAGAAAAATTCATACCAAATTAA 1803 0.3827 MEIPLPSYVVVACDATKDRNEHEIKHVVDRLRRRGDILSASHSLLVLGALHKVPHPMGYQTLACPESFAGANIRAMEEEVNRKVEAYKSVLATSYQQHENKGVSRIEVKITAGFPIRQVIIQEVTNYNPSWVILDRHLRRDLRFYKNKISCRIGLVKDDLSLDIWRSHHITEIEVTEQKLIYSLNKSVSLSGSQSIRDEEQSIMVCKSYPPSITSESSNMSKRNIKHSNANKLEDHNSSTDFRSSSSISINEEYKHPIGSQIYQKQSIYSFLPNSSNAPILCTSCGTQTALYTNDLKRFSYSEIQHATNDFSKENLLGEGGYGHVYKGMLKNGQQIAAKVRKEESKQGFSEFNSEVYVLNFARHKNIVMLLGYCFKERLNILVYEYICNKSLDWHLFDIFADKNAAVLEWHQRYAIAIGTAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMVGDFGLAKWKTSDKTLHTRIMGTLGYLAPEYAEDGIVSVLIDVYAYGIILLQLITGHKATSSPEQHLSLRQWAEPKIEKLEFHELIDSRLGDSYDSNELYILAKVAYYCVQRDHKKRPSIGEVVRCLEGRKDVFYSINAEKFIPN 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00073 600 ProSitePatterns Tyrosine protein kinases specific active-site signature. 436 448 IPR008266 GO:0004672|GO:0006468
Cca05g00073 600 PANTHER OS01G0253100 PROTEIN 8 592 IPR045271 GO:0004714|GO:0006468
Cca05g00073 600 ProSiteProfiles Protein kinase domain profile. 311 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00073 600 PANTHER RECEPTOR-LIKE KINASE 8 592 - -
Cca05g00073 600 SUPERFAMILY Protein kinase-like (PK-like) 292 583 IPR011009 -
Cca05g00073 600 Gene3D Transferase(Phosphotransferase) domain 1 388 595 - -
Cca05g00073 600 Gene3D Phosphorylase Kinase; domain 1 278 386 - -
Cca05g00073 600 Pfam Protein kinase domain 312 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00073 600 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00073 Cca-Chr5 1566887 1580605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00073 264 583 Trihelix Transcription Factor Family AT5G38560 41.369 5.18e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Cca05g00073 Pkinase 3.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00073 - - vun:114163670 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00073 05 1566887 1580605 Cca05g00073 05 1566887 1580605 ECH