Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00068 ATGGTGAAGGAAACCGAGTTCTACGATATCCTCGGGATCACTCCCTCTGCCTCCCAAGACCAAATTCGCAAGGCCTATTACTACAAGGCAATGCAAGTTCATCCCGATAAAAACCCAAACGATCCTCACGCTGCACACAAGTTCCAGATATTGGGTGAAGCTTACCAGGTTTTGAGCGATCCCGTGCAGAGGAATGCGTACAATCAAAATGGGAAGCATTCTGTATCTAGGGAAACTATGCTTGACCCCATGGCTGTCTTCGCTCTGCTCTTTGGGAGTGAACTGTTTGAGGACTACATAGGGCATTTAGCTGTGGCATCAATGGCTTCTTCCGGGCTAGCTGATGAAACTGAGGATCCTGATAAACTGAATGAAAAGTTAAAGGCTGTCCAAAGAGAAAGGGAAGAAAAGTTGGCAAGAATTTTGAGAGATTATCTCAGCCAATATGTCCGTGGTGACAAAAAGGGATTTTTCCAACGCGCAGAATCTGAAGCAAGACGGCTTTCTCGTGCTGCATTTGGAGTTGATATGTTGCATACCATCGGATACATATATTCAAGACAGGCAGCACAAGAACTGGGGAAGAAAGCCATTTATCTTGGAGTGCCATTTCTGACTGAATGGGTACGCAATAAAGGGCATTTCTGGAAATCACAATTCACTGCTGCTAAAGGTGCGTATCAGTTGCTTCAGCTTCAAGAAGACATCCGCAAGCAATTTAAAATGGATGGTAGTAGTGCCCATGAAAATGATGTTGACTCTCACCTTCGCCTCAATAAGGATACATTGATGAATTCCTTGTGGAAGTTAAATGTAGTAGACATAGAAGTAACCCTCGTACATGTGTGTCAAATGGTGCTAAAGGAAAATAACGTTAAGAAAGAGGAACTAAGAGTTCGGGCTACCGCTCTTAAAATTCTTGGCAAAATATTTCAGGACAAGTATCCAAATGGAGAAACATTGAAGAAGAAGATTGCTGCTGATTCAGATGATGATGGAAGCAGTTCTGATTCTTCAGATGATGAATCGCCTAGAGCAATTTCTTATCGAACTCCCTTTTTCACACAGGGTCTCGGTAGGCTCTTCAAATGCCTCTGCAATCCAGCATTTGATGTGGATGATGAAGAGATAGTTTACAAAAGCAAATGA 1149 0.4291 MVKETEFYDILGITPSASQDQIRKAYYYKAMQVHPDKNPNDPHAAHKFQILGEAYQVLSDPVQRNAYNQNGKHSVSRETMLDPMAVFALLFGSELFEDYIGHLAVASMASSGLADETEDPDKLNEKLKAVQREREEKLARILRDYLSQYVRGDKKGFFQRAESEARRLSRAAFGVDMLHTIGYIYSRQAAQELGKKAIYLGVPFLTEWVRNKGHFWKSQFTAAKGAYQLLQLQEDIRKQFKMDGSSAHENDVDSHLRLNKDTLMNSLWKLNVVDIEVTLVHVCQMVLKENNVKKEELRVRATALKILGKIFQDKYPNGETLKKKIAADSDDDGSSSDSSDDESPRAISYRTPFFTQGLGRLFKCLCNPAFDVDDEEIVYKSK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00068 382 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 366 - -
Cca05g00068 382 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Cca05g00068 382 PRINTS DnaJ domain signature 8 26 IPR001623 -
Cca05g00068 382 PRINTS DnaJ domain signature 26 41 IPR001623 -
Cca05g00068 382 PRINTS DnaJ domain signature 43 63 IPR001623 -
Cca05g00068 382 Pfam X-domain of DnaJ-containing 131 315 IPR026894 -
Cca05g00068 382 CDD DnaJ 6 60 IPR001623 -
Cca05g00068 382 SMART dnaj_3 5 63 IPR001623 -
Cca05g00068 382 Pfam DnaJ domain 6 68 IPR001623 -
Cca05g00068 382 Gene3D DnaJ domain 1 85 IPR036869 -
Cca05g00068 382 MobiDBLite consensus disorder prediction 325 344 - -
Cca05g00068 382 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Cca05g00068 382 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Cca05g00068 382 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00068 Cca-Chr5 1471044 1476175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00068 8 68 C2H2 Transcription Factor Family AT1G74250 42.424 2.23e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00068 - - gmx:100793811 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00068 05 1471044 1476175 Cca05g00068 05 1471044 1476175 ECH