Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00065 ATGGCCAATTTTTTAGCAGCTTGTGATGAGGACATGACCATCAAGCCTCGCCGACGTATTCATCATTGGAACCACGCTGAGGACAAAAAGCTACGCCAACTTGTTCGACAATACGGTCCCTATAACTGGGATTCAATTGCTGAGTACATGGAAGGACGAACAGGTAAAAGCTGCAGATTAAGGTGGGTGAATCATCTTGATCCTAGACTTACTAAGAAGCCATTTTCAGAAGAGGAAAAAGAGAGGCTACTTGAGGCTCACCAAGTTCATGGGCCAAGGTGGGCAACAATTGCCAGGCTATTTCCAGGCCGAACCGATATTGCTGTCAAGAATCAATGGAACCTTATAATGACACGGAAGCAAAGAGAGGAACTAAGGAAGATGAGCAGCTTCGAAAACGGTTCAAACACTGAAGAAATGGcttcttcttcttcttcctcGGACAAAGAGTCCAAGGATAGTGGCCATAAACAAGTTCCTTTCTATGATTTTCTTGGTGTTGGTCAACAGAATTGA 516 0.4264 MANFLAACDEDMTIKPRRRIHHWNHAEDKKLRQLVRQYGPYNWDSIAEYMEGRTGKSCRLRWVNHLDPRLTKKPFSEEEKERLLEAHQVHGPRWATIARLFPGRTDIAVKNQWNLIMTRKQREELRKMSSFENGSNTEEMASSSSSSDKESKDSGHKQVPFYDFLGVGQQN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00065 171 ProSiteProfiles Myb-like domain profile. 15 66 IPR001005 -
Cca05g00065 171 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Cca05g00065 171 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 70 IPR017930 -
Cca05g00065 171 PANTHER MYB PROTEIN-RELATED 22 130 - -
Cca05g00065 171 Pfam Myb-like DNA-binding domain 23 83 - -
Cca05g00065 171 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 121 IPR017930 -
Cca05g00065 171 MobiDBLite consensus disorder prediction 126 171 - -
Cca05g00065 171 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Cca05g00065 171 CDD SANT 74 114 IPR001005 -
Cca05g00065 171 CDD SANT 23 66 IPR001005 -
Cca05g00065 171 SMART sant 19 68 IPR001005 -
Cca05g00065 171 SMART sant 71 119 IPR001005 -
Cca05g00065 171 Gene3D - 73 146 - -
Cca05g00065 171 MobiDBLite consensus disorder prediction 130 144 - -
Cca05g00065 171 Gene3D - 21 71 - -
Cca05g00065 171 PANTHER OS08G0435700 PROTEIN 22 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00065 Cca-Chr5 1403606 1406121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00065 15 146 MYB Transcription Factor Family AT4G33450 56.061 1.62e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g00065 Myb_DNA-bind_6 2.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00065 K09422 - egr:104450886 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00065 05 1403606 1406121 Cca05g00065 05 1403606 1406121 ECH