Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00064 ATGACAGATTCTTCAGCAGCTAATTATAATGAGAGCATGACCAATAAGTGTTCCCGACGATGTCATCATTGGAATCATGCTGAGGATAAAATGCTACGTGAACTTGTTCGACAACGTGGTCCCCATGACTGGGATTTAATTGCGAAGAATATTGAAGGAAGAACAGGTAAAAGCTGCAGATTAAGGTGGTTCAATCACCTTGATCCAGAACTTAAGAAAACGCCATTTTCAGAAGAGGAAAATGAGAGACTACTTGCGGCTCACGATGTTTATGGAAGCAGGTGGCCAAAAATAGCCAAGCAATTTCCTGGTCGAACCGATGTTGCTGTTAAGAATCAATGTAACCTTCTAATGGCATGGATGCAGAGGAAGGATTCAAAGAAGAAAAGTTTTGATGAAGATTCAAACCTTGAAGAAGGGGCTTCTTCTTCCCCAGAGGATGAGCTAAAGGATAGTGGTCATAAACAAGTTCCTTTTTATGATTTTCTTGGTGTTGGTGAATAG 504 0.4067 MTDSSAANYNESMTNKCSRRCHHWNHAEDKMLRELVRQRGPHDWDLIAKNIEGRTGKSCRLRWFNHLDPELKKTPFSEEENERLLAAHDVYGSRWPKIAKQFPGRTDVAVKNQCNLLMAWMQRKDSKKKSFDEDSNLEEGASSSPEDELKDSGHKQVPFYDFLGVGE 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00064 167 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 112 IPR017930 -
Cca05g00064 167 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 71 IPR017930 -
Cca05g00064 167 MobiDBLite consensus disorder prediction 124 155 - -
Cca05g00064 167 Gene3D - 22 72 - -
Cca05g00064 167 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Cca05g00064 167 PANTHER OS08G0435700 PROTEIN 12 127 - -
Cca05g00064 167 Gene3D - 74 147 - -
Cca05g00064 167 CDD SANT 24 67 IPR001005 -
Cca05g00064 167 Pfam Myb-like DNA-binding domain 24 84 - -
Cca05g00064 167 SMART sant 20 69 IPR001005 -
Cca05g00064 167 SMART sant 72 120 IPR001005 -
Cca05g00064 167 CDD SANT 75 118 IPR001005 -
Cca05g00064 167 PANTHER MYB PROTEIN-RELATED 12 127 - -
Cca05g00064 167 ProSiteProfiles Myb-like domain profile. 24 67 IPR001005 -
Cca05g00064 167 SUPERFAMILY Homeodomain-like 18 113 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00064 Cca-Chr5 1380394 1381975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00064 17 127 MYB Transcription Factor Family AT1G17950 59.459 3.35e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g00064 Myb_DNA-bind_6 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00064 K09422 - pda:103716419 145.591