Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00063 ATGTGTGCTTCACTTGCAAGAATTGAATCCACAGTCATGGCCAATTCTCAAGCAGCTTCTGATAGCATGGACAGTGTGTCTCGCCGTCGTGTTCACCACTGGAGAGAAACCGAAGATGATAAGCTCCGCCAACTTGTTCAACAACGTGGACCCAAGGAATGGAAGGAAATTGCTCAACATATGGATGGACGAACTGGCAAGAGCTGCAGATTAAGGTGGGTGAACCATCTTAATCCCAAGCTCAACAGAAACCCATTTACAAAGGAGGAAGAAGAGACACTGCTTGCAGCTCACAGGTACTATGGGGCAAGATGGGCAAGTATAGCGAGACACTTCCCTGGTCGAACTGATAATTTTGTGAAGAATAGTTGGCATGTTGCTATTGCCAGAAAGAGAAAGGAAGAGTTCAGGAGGAGAATCGTGCAAGAGCACAACAACCGTGCAAGAAACAACAATGGTTGGATCTACTTTACTATCTTTGGATCCACCTTTCCTCTGATGTATCCACATGGGAATGAGCAAAGGGTCAATGCTGCTCCAGAACACTTTGCAAGGATGAATGACAACTTTGGAGGTTTGCTTGATAACtcagcatcagcatcagcatcagcatcagcatctgcatctgcatctgcatctgcatcatcatcaTCTGCTTTCACCAAGTTTAGGGCTTCTTCTTCCTCTGAGGGAGGACATGCTGATGAGGAGTCAGATGATGGTGGACGCAAAGAAATTCCTTTCTTTGATTTTCTTGGTGTTGGTCACCAGTGA 774 0.4186 MCASLARIESTVMANSQAASDSMDSVSRRRVHHWRETEDDKLRQLVQQRGPKEWKEIAQHMDGRTGKSCRLRWVNHLNPKLNRNPFTKEEEETLLAAHRYYGARWASIARHFPGRTDNFVKNSWHVAIARKRKEEFRRRIVQEHNNRARNNNGWIYFTIFGSTFPLMYPHGNEQRVNAAPEHFARMNDNFGGLLDNSASASASASASASASASASSSSAFTKFRASSSSEGGHADEESDDGGRKEIPFFDFLGVGHQ 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00063 257 Gene3D - 84 153 - -
Cca05g00063 257 Gene3D - 32 82 - -
Cca05g00063 257 MobiDBLite consensus disorder prediction 206 257 - -
Cca05g00063 257 PANTHER MYB PROTEIN-RELATED 31 255 - -
Cca05g00063 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 132 IPR017930 -
Cca05g00063 257 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 31 255 - -
Cca05g00063 257 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Cca05g00063 257 SUPERFAMILY Homeodomain-like 28 124 IPR009057 -
Cca05g00063 257 MobiDBLite consensus disorder prediction 229 246 - -
Cca05g00063 257 Pfam Myb-like DNA-binding domain 34 94 - -
Cca05g00063 257 CDD SANT 85 125 IPR001005 -
Cca05g00063 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 81 IPR017930 -
Cca05g00063 257 ProSiteProfiles Myb-like domain profile. 34 77 IPR001005 -
Cca05g00063 257 MobiDBLite consensus disorder prediction 206 228 - -
Cca05g00063 257 CDD SANT 34 77 IPR001005 -
Cca05g00063 257 SMART sant 30 79 IPR001005 -
Cca05g00063 257 SMART sant 82 130 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00063 Cca-Chr5 1364996 1366899 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00063 33 255 MYB Transcription Factor Family AT4G33450 39.344 3.07e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g00063 Myb_DNA-bind_6 4.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00063 K09422 - gmx:102660725 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00172 03 2636275 2638287 Cca05g00063 05 1364996 1366899 PCT