Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00061 ATGGCCAATTCTCAAGCAGCTTCTGAGAGCATGGACAGTGAGTCTCGCCGTCGTGTTCATCACTGGAAAGAAACAGAAGATGATAAGCTCCGCCAACTTGTTCAACAACATGGACCAAAGGAATGGAATACTATTGCTGAACATATGGAAGAAAGAACAGGCAAAAGCTGCAGATTAAGGTGGGTGAATCATCTTGATCCTAAACTCAACAGAAACCCATTTACAAAAGAGGAAGAGGAGAGGCTTCTTGCAGCTCGTGAGTTTTTTGGGGCAAGATGGGCAATGATAGCGAAAATCTTCCCTGGTCGAACCGATAATTTTGTGAAGAACCGTTGGCACGTTACTGTAGCCAGAAAGAGAAAGGAAGAGTTTAGGAGAAGAATCATGCAAGAGCACAATAACCGTTCAAGGGCTTCCTCTTCCAGAGACAACAATGCCTCACTTGCAAAGCCTCAGCCTCAGGAATTACCACTCTTTGGGCCAAGAAATGAGTTGGGGCGTGGAGCACTAATGATGAGGCAAGAAAAGGCACACGCAACCTTGTGCCCTAATAGTTGGTTGAGCCCTTCAAACTTTGGATCTGTTCCATCTTTTGCTGAAACTAATTTTCCTTTGGTGGGTCCATATTTGAGTGTGCAAAGGGTTAATGCTGTTCCGGAACATTTTGGATTGCTTCGTGACGCAAGGATTAATGGGAACTTTGGAGGTTTGTTTGGTAACTCGTCATCATCATCTGCATTCACAAAGTTTAGGGCTTCTTCTTCCTCAGAGAAAGGGAAAGCTCGTGAGGAGTCAAGTGATAGTGGAGGGAAAGAAATTACTTTCTTTGATTTTCTTGGTGTTGGTGACCAGTGA 855 0.4433 MANSQAASESMDSESRRRVHHWKETEDDKLRQLVQQHGPKEWNTIAEHMEERTGKSCRLRWVNHLDPKLNRNPFTKEEEERLLAAREFFGARWAMIAKIFPGRTDNFVKNRWHVTVARKRKEEFRRRIMQEHNNRSRASSSRDNNASLAKPQPQELPLFGPRNELGRGALMMRQEKAHATLCPNSWLSPSNFGSVPSFAETNFPLVGPYLSVQRVNAVPEHFGLLRDARINGNFGGLFGNSSSSSAFTKFRASSSSEKGKAREESSDSGGKEITFFDFLGVGDQ 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00061 284 MobiDBLite consensus disorder prediction 255 270 - -
Cca05g00061 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Cca05g00061 284 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
Cca05g00061 284 Gene3D - 72 147 - -
Cca05g00061 284 Pfam Myb-like DNA-binding domain 22 82 - -
Cca05g00061 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 69 IPR017930 -
Cca05g00061 284 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Cca05g00061 284 SMART sant 18 67 IPR001005 -
Cca05g00061 284 SMART sant 70 118 IPR001005 -
Cca05g00061 284 MobiDBLite consensus disorder prediction 130 163 - -
Cca05g00061 284 PANTHER OS08G0435700 PROTEIN 14 283 - -
Cca05g00061 284 MobiDBLite consensus disorder prediction 1 26 - -
Cca05g00061 284 MobiDBLite consensus disorder prediction 11 26 - -
Cca05g00061 284 PANTHER MYB PROTEIN-RELATED 14 283 - -
Cca05g00061 284 MobiDBLite consensus disorder prediction 244 270 - -
Cca05g00061 284 CDD SANT 73 113 IPR001005 -
Cca05g00061 284 CDD SANT 22 65 IPR001005 -
Cca05g00061 284 Gene3D - 20 70 - -
Cca05g00061 284 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00061 Cca-Chr5 1355911 1358232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00061 21 282 MYB Transcription Factor Family AT4G33450 38.060 2.49e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g00061 Myb_DNA-bind_6 1.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00061 K09422 - gmx:102660725 209.149