Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00060 ATGTCACTGGTTATATCTACAGAGCTGGCTGATGCATCATATAGGAATGCTAAACTCTACACACTAAAGGGAACTGATGTTACACCAGGCTTGTCCTCCCACAGTTTTGCTCCAGATAAGCACAGAAACATGTACGTAACAAATTCTTACTCCAGTGAGATCAGTTATGAAAAGTACTTCCGCGATTCGCCGACAGAAGAGCTGATAGAGCCATCCAGTTCCAGCATATCAGCAAACTCAGTTCACCCTGATGCTGCTTCTTCTTACCTTCTCAGAGCCAGTTCAGGAGCTTCTGTCATTGCTGATAACCCCTTTGACTCTTCCATCTTGTCTACAAGGCATCATAGCGGCAGTTCTCAGTCCAATTTCGTGGAAAATGAGAGCCCGGATTGCCTTGACTTCGACGGAGAAATGAGACTAAAACTGCTAGAACTGGAGAGGGCTTTGCTTTCTGATGAAGAAGAGGAGGAGGAAGACATATTTGAGACAGTTCAAAGCATGGAGATTGATCGCGAGGTGGCCGAGTGGGCGAATCCCCTTCAAGATATGCTGCTCCATGACTCACCAAAGGAGTCCTCATCCTCAGATTGTTCCAATCTTAGCAGCATAAGTAGCAGCACCAAAGAAATGACCCCCAAGCAACTGCTATATGATTGTGCTAGAGCACTTTCAGAAGGGAATGAAGAGGAAGCAACATCTATGATCAACAATCTGAGGCAAATTGTCTCAATTCAGGGTGATCCTTCCCAAAGGATTGCAGCCTACATGGTGGAAGGACTTGCGGCTCGCGTGGCTTCGTCAGGAAAATGCATCTATCAAGCCTTGCGATGCAAGGAACCTCCCTCTTCAGATCGCTTAGCAGCAATGCAGATACTGTTTGAGGTCTGTCCTTGCTTCAAATTCGGATTCATGGCTGCAAATGGCGCAATAGCTGAGGCCGTTAGAGATGAAAAGAAGGTTCACATAGTAGACTTTGACATCAGCCAGGGAACTCAATACATAACTCTAATACAAACACTTGCTTCAATGCCAGGTAGGCCACCTCATGTGAGACTGACCGGGGTGGATGATCCTGAGTCTGTGCAGCGACCTGTCGGTGGCCTCAACATCGTCGGACAACGCCTTGAAAAGCTCGCCGAGGAACTCGGCTTGCCATTCGAGTTTCACGCCGTGGCATCAAGGACATCGCTTGTCACGCCGCCAATGCTCAACTGCCGTCAAGGGGAAGCTCTGGTGGTGAATTTTGCATTCCAGCTGCATCACATGCTTGATGAAAGTGTGTCAACCGTGAATGAGAGGGACCAACTTCTGAGAATGGTTAAGAGCTTGAATCCGAAGCTTGTGACGGTTGTGGAGCAAGACATGAACACAAACACTAGCCCTTTTCTTCAGAGGTTTGTTGAGGCCTACAACTACTACTCTGCTGTGTTTCACACGCTTGATGCAACTCTCCCCAGGGAGAGCCAGGACAGGATGAATGTTGAGAGGCAATGCTTGGCAAAGGACATCGTTAACATCATCGCGTGCGAGGGCGAGGACCGGATAGAACGGTACGAGGTTGCTGGAAAGTGGAGGGCCAGGCTGAGGATGGCCGGGTTCACTTCATCACCAATGAGCACAAATGTGAGGGAAGCAATAAGGAAACTCATTGTTAAGCAGTACTGTGAGAGGTTCAAGATAAAGGAGGAAATGGGGGCACTTCATTTTGGTTGGGAGGACAAAAACTTGATCGTTGCTTCAGCGTGGAAGTGA 1752 0.4817 MSLVISTELADASYRNAKLYTLKGTDVTPGLSSHSFAPDKHRNMYVTNSYSSEISYEKYFRDSPTEELIEPSSSSISANSVHPDAASSYLLRASSGASVIADNPFDSSILSTRHHSGSSQSNFVENESPDCLDFDGEMRLKLLELERALLSDEEEEEEDIFETVQSMEIDREVAEWANPLQDMLLHDSPKESSSSDCSNLSSISSSTKEMTPKQLLYDCARALSEGNEEEATSMINNLRQIVSIQGDPSQRIAAYMVEGLAARVASSGKCIYQALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIAEAVRDEKKVHIVDFDISQGTQYITLIQTLASMPGRPPHVRLTGVDDPESVQRPVGGLNIVGQRLEKLAEELGLPFEFHAVASRTSLVTPPMLNCRQGEALVVNFAFQLHHMLDESVSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTSPFLQRFVEAYNYYSAVFHTLDATLPRESQDRMNVERQCLAKDIVNIIACEGEDRIERYEVAGKWRARLRMAGFTSSPMSTNVREAIRKLIVKQYCERFKIKEEMGALHFGWEDKNLIVASAWK 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00060 583 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 10 582 IPR030011 GO:0003700|GO:0005634
Cca05g00060 583 MobiDBLite consensus disorder prediction 185 206 - -
Cca05g00060 583 Pfam GRAS domain family 213 583 IPR005202 -
Cca05g00060 583 Coils Coil 140 160 - -
Cca05g00060 583 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 582 IPR005202 -
Cca05g00060 583 ProSiteProfiles GRAS family profile. 203 583 IPR005202 -
Cca05g00060 583 MobiDBLite consensus disorder prediction 187 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00060 Cca-Chr5 1322779 1326735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00060 1 583 GRAS Transcription Factor Family AT1G21450 60.307 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca05g00060 GRAS 3.6e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00060 - - gmx:100807048 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00060 05 1322779 1326735 Cca05g00060 05 1322779 1326735 ECH
Cca05g00060 05 1322779 1326735 Cca03g01050 03 25510977 25514623 PCT