Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00059 ATGACTTCGTCGGAGGCCAAAACCGAAACCCTCGATGGCGTCAAAGAAGAGGATTCTATCGTTGACAACAAATGCGACAAGTTCTACGATGTCTATGGTCCCCAAGGCAAGGCGGATGTTGTTTTCAAAGACGATAATTCTACTCTGAATCTTAATGATGTTCAAGGACTTGTAACTTGGGTGCTTGGTGAAGGATTTATGCCGTCATGGATTTTTATCAAGAATAAACCTCTTATTCCCAAGGTGGTTATGCTCTATATGCCGGGCCTGGATGCAGCTTTGTTCTTGTCGCAGTCTAAAATGCTTCCCAATTTAAAAAAAATCTGTGGCAAACCAAGGCCTCTCCTAGCTCTTAGCTGTGTATCAGATGGTATGCAGACGATTGATGCGCTCCTAACATGCAAGGTGAAAAGAAAAAGGGACCAGAATAGTTCAATTATGAGCAAATCTTCCGTGGCATCTCAACAAGAAGGTTCTTGTGACAACCTATCATTTACGGAGCTTACAAAAGACATACCTTTCCCTGTTACATACTATACACTGTCAGAGAAAGAGCTGGAAGATAATGGATATTCTGTTAATAAGCCAGGTTTTATTTCTACTTTGCCTGCACCTTTGGGATCTCATTTTAATGAGATGTTGGCACTTGATTGTGAGATGTGCATAACAAGTGAAGGTTTTGAGCTGACAAGAATTACTCTAGTGGATTTCAAAGGACAGGTTTTGATTGATAAATTGGTTAAACCATCAAATGCTATTGTTGATTACAACACAAGATTTAGTGGAATAACGCCTGAGATGTTAGATGGGGTGACAACAAGTCTGACAGACATTCAGGAAGAGTTCATAAAGTTGGTTTACAAGGAGACTATCCTCGTTGGGCATTCTTTGGAAAATGATTTATTAGCATTAAAAATATCTCATGACTCAGTCATTGACACTGCAGTATTATACAAACACCCTCGAGGATCATCCCATAAAACTGCTCTACGGTTTCTTACTAAGAGATTTCTTTCAAGGGAGATACAGCAATCAGAGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCATGGAATTGGCACTATTGAAGATAAGAAATGGGCCTGACTTTGGTTCCCCCCCATCCTTTACACGGAAAAAGTTCCTTTCTATTCTGAGTGAATCTGGCAGAACTTCCTCGGTGATTGATGATGTATCCATAGTAAAACGGTATGCCTCTGAGTCCTCTAATGCAATTCCTGTGACCTCTGATGATGAAGCACTTGCAAAGATCAACAAGGAGGTGAAGAATGAAAAGGTACACTTTATCTGGACTCAGTTTTCGGAGCTACACTCGTACTTGAAGAAACAAGCTGAAGATTCTGAAAGCTTGAATAAAAGACTGGCAGAGATGATGGCATTACTTACATGTCAGAATAACTTTGCCAAAGGGAAAGGCTTAAAGTTGAAACCCACAGCTGAACTGAAGGAAATTCTGGCTCGCATGGATGCTAGAATTTATAAACTGTATTTGTCATTACCCACAAATGCTATGATGATAATTTGCACTGGTCATGGAGACACTGCTGTCGTTCGCAGGCTGAGGAGAATGCTTGCGCAACAGAATGACAGTAATTTATGTCGTGAAAAGATAGTGGAAATATTAGAAGAGGTTCAGGCCCGAGCTGAAGTAGCCTTGTGTTTTGTAGGTGTTAAGCATTGA 1707 0.406 MTSSEAKTETLDGVKEEDSIVDNKCDKFYDVYGPQGKADVVFKDDNSTLNLNDVQGLVTWVLGEGFMPSWIFIKNKPLIPKVVMLYMPGLDAALFLSQSKMLPNLKKICGKPRPLLALSCVSDGMQTIDALLTCKVKRKRDQNSSIMSKSSVASQQEGSCDNLSFTELTKDIPFPVTYYTLSEKELEDNGYSVNKPGFISTLPAPLGSHFNEMLALDCEMCITSEGFELTRITLVDFKGQVLIDKLVKPSNAIVDYNTRFSGITPEMLDGVTTSLTDIQEEFIKLVYKETILVGHSLENDLLALKISHDSVIDTAVLYKHPRGSSHKTALRFLTKRFLSREIQQSENGHDSIEDARATMELALLKIRNGPDFGSPPSFTRKKFLSILSESGRTSSVIDDVSIVKRYASESSNAIPVTSDDEALAKINKEVKNEKVHFIWTQFSELHSYLKKQAEDSESLNKRLAEMMALLTCQNNFAKGKGLKLKPTAELKEILARMDARIYKLYLSLPTNAMMIICTGHGDTAVVRRLRRMLAQQNDSNLCREKIVEILEEVQARAEVALCFVGVKH 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00059 568 Gene3D - 209 371 IPR036397 GO:0003676
Cca05g00059 568 Coils Coil 449 469 - -
Cca05g00059 568 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 15 553 - -
Cca05g00059 568 PANTHER LD29573P 15 553 - -
Cca05g00059 568 SUPERFAMILY Ribonuclease H-like 213 366 IPR012337 -
Cca05g00059 568 CDD REX1_like 214 363 IPR034922 -
Cca05g00059 568 SMART exoiiiendus 212 371 IPR013520 -
Cca05g00059 568 Pfam Exonuclease 215 361 IPR013520 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00059 212 361 C2H2 Transcription Factor Family AT3G27970 28.655 1.20e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00059 K14570 - gmx:100802793 972.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00059 05 1310561 1321762 Cca05g00059 05 1310561 1321762 ECH