Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00058 ATGTCTAGGACGCTGGTGCAGCCGATTGGGCAGAAAAGGCTCACAAACGTCGCAGCGGTGCGTCTCAAGAAGCATGGCATGCGCTTCGAGATCGCTTGCTACCCTAACACCGTCCTCTCTTGGCGTTCTGGCGTGGAAAAGGACCTGGATGAAGTGCTGCAGTCCCACACTGTGTATTCCAATGTTTCCAAAGGGGTTCTCGCCAAGTCCAAGGATTTGATTGCAGCCTTTGGCACCGATGACCAAACCAAGATATGCTTAGAGATCTTAAAGAAAGGGGAGCTTCAAGTAGCTGGGAAAGAGAGGGAATCACTGTTGTCGAGTCAGTTCAGGGATATTGCGACCATAGTGATGCACAAGACTTACAATCCCGAGACTCAGCGCCCTTACACTATCAGTATGATTGAACGCCTCATGCGGGAAATCCATTTCGCTGTTGATCCACACAGCACATCCAAGAAGCAGGCTCTCGAGTTGATTCAAGAGCTTCAAAAGCACTTCCCTATAAAACGGTGTCCGTTGAGAATACGAGTCACTGCTTCTGAGGACCAAGTGCCTGAACTTTTAGAAAAGTTGAATGCATGGAATGCTACTGTTATTTCTAAAGAAGGATCTTCTGCTCAGTCATCTGTTATTTTTGAATTGGAACCTGGTCTATATAAGGATTGTCACGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTTTATGTGGACGGGGATACCCAAGTGGAGCAATACAATGATTATGAGGATACGCCTGTACCGTTGCCCAAAGAAAATCTTGATTCTGTGCTTGAACTGAATGAAAAAATTCAAAAGCAAACAATTTCATCTACAAGTAGGTCTACTGAGGGACAACAAAAGCAAAACAAGTGCAACACATGTAATGTTTCTTTTGATGACTCTAAGTTGTACAGGGAACATCACAAGAGTGAGTGGCACAAACACAATATGAAGCGTAAGACAAGGCAACTCCCACCACTTACTGAGGAAGAGTGCATGGCAGACCTGGAATTGGGTGACTCAAAATCTGATTTGAAGGATTATTCGTTTTGA 1077 0.4448 MSRTLVQPIGQKRLTNVAAVRLKKHGMRFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLIAAFGTDDQTKICLEILKKGELQVAGKERESLLSSQFRDIATIVMHKTYNPETQRPYTISMIERLMREIHFAVDPHSTSKKQALELIQELQKHFPIKRCPLRIRVTASEDQVPELLEKLNAWNATVISKEGSSAQSSVIFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVDGDTQVEQYNDYEDTPVPLPKENLDSVLELNEKIQKQTISSTSRSTEGQQKQNKCNTCNVSFDDSKLYREHHKSEWHKHNMKRKTRQLPPLTEEECMADLELGDSKSDLKDYSF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00058 358 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Cca05g00058 358 MobiDBLite consensus disorder prediction 343 358 - -
Cca05g00058 358 Gene3D - 1 96 IPR036786 -
Cca05g00058 358 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Cca05g00058 358 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Cca05g00058 358 Gene3D - 100 172 IPR037188 -
Cca05g00058 358 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Cca05g00058 358 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 232 IPR002140 GO:0042256
Cca05g00058 358 SUPERFAMILY beta-beta-alpha zinc fingers 291 343 IPR036236 -
Cca05g00058 358 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Cca05g00058 358 MobiDBLite consensus disorder prediction 318 358 - -
Cca05g00058 358 Gene3D Classic Zinc Finger 288 346 - -
Cca05g00058 358 PANTHER BNAANNG06530D PROTEIN 1 358 - -
Cca05g00058 358 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 358 IPR039100 -
Cca05g00058 358 Gene3D - 174 251 - -
Cca05g00058 358 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Cca05g00058 358 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00058 27 358 C2H2 Transcription Factor Family AT1G43860 58.261 5.38e-142 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca05g00058 SBDS_C 9.7e-28 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00058 K14574 - gmx:100797497 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00058 05 1305326 1308221 Cca05g00058 05 1305326 1308221 ECH