Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00055 ATGGTGCCTCCTGGGCAACCCACGCAGATTGGTAGTGCCCAGTCTGTGTCACCGTCCCTTTTGAGATCGAATTCGGGAATGTTGGGGGGTCAAGGGGGGCCTGGGCCTTCACAAACTTCGTTCCCTTCGCTGGTTGCACAGAGAACCCAGTTTAACAACATGAACATGCTAGGAAATATGCCTAATGTAGCTTCCTTGCTGAATCAGTCTTACCAGAATGGAATTCCGAATTCTGGGCTTGCTGGCCCTGCGAGTAGCCAGCGTGCTGGAGGCGTTGATGCTGGGGCAGAATCGGATCCGCTATCTGGTGTTGGAAATGGGATGAATTTTGGCAATCCTATGCAATCAAATTTGGTGAACCATGGTTCGTCTGGTCAAGGTCAGGGTCAACAATTTTCAAATGCTTCTGGTAACCAGATGTTGCCAGATCAGCAGCATTCCCAGCAACTTGAAGCTCAGAATTTCCAACAACATGGTCAACAGTCAATGCAACAGTTCTCTGCTCCTCTGAATGCTCAGCAGCAACAGCAGCATTTTCAGTCGATTCGAGGAGGGATGGGTGGTGTTGGACCAGTGAAGTTGGAGCCACAGGTAAACAGTGATCAGTTTGGGCAGCAGCAGTTGCCATCAAGGAATCTTGCTCAGGTGAAACTGGAACCACAACAACTTCAAACTATGAGAAATATGGCTCAAGTTAAAATGGAACCCCAACATACAGATCAGCAGTTTTTGcatcagcagcaacaacatcaacagcaacaacTGCTCCACATGTCAAGGCAATCCTCTCAGGCTGCCGCTGCTCAGATGAATCATCTCTTgcagcagcagagaattttccaatatcaacaacatcagcagcagcaccaacagcaacTCTTGAAGGGAATGCCTCAACAACGGTCTCATCTACCACAGCAATTTCAACAACAGAATATGCCTATGAGGTCTCCTGCAAAATCAACATATGAACCTGGGATGTGTGCTAGGCGGCTGACACATTATATGTATCAACAACAACATAGACCTGAAGACAACAACATCGAATTCTGGAGGAAATTTGTTGCTGAGTATTTTGCTCCTAATGCCAAAAAGAAGTGGTGTGTTTCCATGTATGGAAGTGTTAGACAAACTACTGGAGTCCTTCCTCAGGATGTGTGGCACTGTGAAATATGTAATCGCAAACCTGGCCGTGGGTTTGAAGCAACTGCTGAGGTTCTTCCCAGGCTTTTCAAAATTAAGTATGAAAGTGGTACGTTGGAAGAGCTACTTTATGTTGACATGCCTCGTGAATATCATAATTCCTCCGGCCAGATAGTTCTAGATTATGCAAAAGCAATACAAGAAAGCGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGTCAACTTCGGATTGTTTTCTCTCCAGACCTGAAGATATGCTCTTGGGAGTTTTGTGCTCGGCGCCATGAAGAGCTCATCCCGAGAAGATTGTTAATACCTCAGGTTAGTCAGCTTGGAGCAGTAGCTCAAAAATACCAGGCATTTACTCAAAATGCAACACCCAATTTATCTGTTCCAGAGTTACAAAATAATTGCAATATGTTTGTTGCATCAGCCCGTCAGTTGGCAAAAGCTTTAGAAGTCCCATTGGTCAATGATTTAGGATATACAAAGAGATACGTGCGGTGCCTTCAGATATCAGAAGTGGTAAATAGTATGAAAGATTTGATAGATTATAGCAGAGAAACAGGGACTGGACCCATGGACAGCTTAGCTAAATTCCCTAGGAGAACAGGTGGTGGTTCATCTGGACTTCATAGTCAGGCACAACAGTCTGAAGACCAATTACAGCAGCAGTCACAGCCACAGCAGTCACCCCGGCATATGGTGCCCCATACTTCAAATGGTGATCCAAACTCAGTGCAAACTGCTGCCATGCAAATTGCATCTAGCAATGGTGTGGCTAGTGTAAATAACTCTGTCAATGCAGCATCTGCATCAACCACCACAAGCACTATTGTTGGACTCCTCCACCAAAATTCTATGAATTCTAGACAAAATTCAATGAACAATGCAAGCAGCCCTTATGGAGGTAGTTCTGTTCAGATTCCATCCCCAGGTTCCTCCGGTAATGTGCCACAAGCGCAACCAAATGCATCCCCTTTTCAATCACCGACCCCATCCTCATCTAACAATCCCCAAACATCTCACCCTGCCTTAACTTCTGCAAACCACATGGGTACAACAAACTCACCAGCTAATATTTCCTTGCAACAACAGCAGACATCTCTTCCTGTTGAAGCTGACCCTAGTGATGCCCAGAGCTCAGTTCAGAAAATCATTCATGAGATGATGATGTCCTCCCAGATGAATGGCACTGGTGGAATGACTGGAACCGGTTCACTTGGAAACGACATGAAGAATGTAAACGGAATTCTGCCAGTGAATAACAGTGCAGGGGTAAATAGTGGCAATGGCCTGGTGGGTAACGGGACTGTGAACAGTAATTCAGGTGTCGTAGTTGGTGGTTATGGTACAATGGGTCTTGGTCCATCAGGTATGACCAATGGGATGAGACCTGTAATGGGAAATAACTCAATCATGAATGGAAGAGGAGGGATGGCATCTCTTGCTCGGGACCAAGTTATGAATCATCAACAGGATTTGTCAAGCCAACTACTTAGTGGGCTAGGAGCAGTAAATGGCTTTAATAATCTTCAATTTGATTGGAAACCATCTCCATGA 2727 0.4386 MVPPGQPTQIGSAQSVSPSLLRSNSGMLGGQGGPGPSQTSFPSLVAQRTQFNNMNMLGNMPNVASLLNQSYQNGIPNSGLAGPASSQRAGGVDAGAESDPLSGVGNGMNFGNPMQSNLVNHGSSGQGQGQQFSNASGNQMLPDQQHSQQLEAQNFQQHGQQSMQQFSAPLNAQQQQQHFQSIRGGMGGVGPVKLEPQVNSDQFGQQQLPSRNLAQVKLEPQQLQTMRNMAQVKMEPQHTDQQFLHQQQQHQQQQLLHMSRQSSQAAAAQMNHLLQQQRIFQYQQHQQQHQQQLLKGMPQQRSHLPQQFQQQNMPMRSPAKSTYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSVRQTTGVLPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAVAQKYQAFTQNATPNLSVPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMDSLAKFPRRTGGGSSGLHSQAQQSEDQLQQQSQPQQSPRHMVPHTSNGDPNSVQTAAMQIASSNGVASVNNSVNAASASTTTSTIVGLLHQNSMNSRQNSMNNASSPYGGSSVQIPSPGSSGNVPQAQPNASPFQSPTPSSSNNPQTSHPALTSANHMGTTNSPANISLQQQQTSLPVEADPSDAQSSVQKIIHEMMMSSQMNGTGGMTGTGSLGNDMKNVNGILPVNNSAGVNSGNGLVGNGTVNSNSGVVVGGYGTMGLGPSGMTNGMRPVMGNNSIMNGRGGMASLARDQVMNHQQDLSSQLLSGLGAVNGFNNLQFDWKPSP 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00055 908 MobiDBLite consensus disorder prediction 677 747 - -
Cca05g00055 908 MobiDBLite consensus disorder prediction 78 190 - -
Cca05g00055 908 MobiDBLite consensus disorder prediction 7 42 - -
Cca05g00055 908 MobiDBLite consensus disorder prediction 108 182 - -
Cca05g00055 908 MobiDBLite consensus disorder prediction 575 634 - -
Cca05g00055 908 MobiDBLite consensus disorder prediction 1 42 - -
Cca05g00055 908 Pfam LIM-domain binding protein 331 585 IPR029005 -
Cca05g00055 908 PANTHER LIM DOMAIN-BINDING PROTEIN 1 907 IPR029005 -
Cca05g00055 908 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 907 - -
Cca05g00055 908 MobiDBLite consensus disorder prediction 595 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00055 Cca-Chr5 1276923 1289507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00055 1 904 C2H2 Transcription Factor Family AT1G43850 59.703 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00055 - - gmx:100798031 1356.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00055 05 1276923 1289507 Cca05g00055 05 1276923 1289507 ECH