Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00052 ATGTCTCAATACCTTGAACAAGAATCAACTGGGGCTAGTCGAATCAGAAAGAGAACAAAATGTGTCCATTGGACTGATGATGAACACAGGTTATTTCTTTTGGGACTGAAGAGATTTGGCAAGGGAAAATGGAAAGATATTGCTCAAAAGGTTTTATTGACAAAAACTAAAACCCAAATTGCAAGTCACGCTCAAAAATTTTTCCTTCGCAAGAGTAGTGCGAAGAAAAGAAGAAGCATCCACGATCTAACATTAGACGATGACGCAGGCTTCAAATATGACCAACAAAATCGAGAAATAACAGGCTCACAAACACAAAGTAATAACTTTGTACAATCGATAGAGGAACCCTCACCACCCTTTGAAGGTTACTCGGTACTCCAACATTTTGAGCAGCAGCAACAAACTGAGGCACCCTCGACAGTGCAACAAATACCTCACCACTTGGACAATCATGACTTGGCTCCTCTCCCCAATCAAATAGAATTACCTCAACTCTTTGACAAGGAGAATTTCGTTCCTCACTTCACTCAACTTTATAGCTCGGATCCAATTCTCCATCAACACTTGCCTAACAACTTTGACTTTAATTATTTTTGA 600 0.3967 MSQYLEQESTGASRIRKRTKCVHWTDDEHRLFLLGLKRFGKGKWKDIAQKVLLTKTKTQIASHAQKFFLRKSSAKKRRSIHDLTLDDDAGFKYDQQNREITGSQTQSNNFVQSIEEPSPPFEGYSVLQHFEQQQQTEAPSTVQQIPHHLDNHDLAPLPNQIELPQLFDKENFVPHFTQLYSSDPILHQHLPNNFDFNYF 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00052 199 CDD SANT 24 68 IPR001005 -
Cca05g00052 199 PANTHER TRANSCRIPTION FACTOR KUA1 12 127 - -
Cca05g00052 199 Gene3D - 22 73 - -
Cca05g00052 199 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Cca05g00052 199 SMART sant 20 70 IPR001005 -
Cca05g00052 199 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Cca05g00052 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 72 IPR017930 -
Cca05g00052 199 Pfam Myb-like DNA-binding domain 23 66 IPR001005 -
Cca05g00052 199 ProSiteProfiles Myb-like domain profile. 24 68 IPR001005 -
Cca05g00052 199 PANTHER TRANSCRIPTION FACTOR SRM1 12 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00052 Cca-Chr5 1201265 1202101 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca05g00052 Myb_DNA-binding 4.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00052 - - aprc:113855820 103.605