Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00050 ATGACTCCACACCTTAAGCAAGAATCAACTGCGGCTAGTCAGAGAACAAAATGTGTCCATTGGACTGAAGATGAACACAGGTTATTTCTTTTGGGACTGAAGAGATTTGGCAAGGGAAAATGGAAAGATATTGCTAAAAAGGTTTTGTTGACAAAAACTAAAACCCAAATTGCGAGTCACGCTCAGAAATTTTTCCTTCACAAGAGTAGTGCGAAGAAAAGAAAAAGCATCCACGATCTAACATTAGATGATGACGCAAACTTCAAATATGACCAACAAAATCGAGAAATAACAGGCTCACCAGGTAATAACTTGGTACAATACTCGATAGATGAACACAGTCCAAATGAGCAATTACAAGAGGAACCCTCACCACCCTTTGAAGCTTACTCAGTGCTTCAACATTTTGAGCAGCAACAACAAAGTGAGGCTCCCTCGGCAGTGCAACAATTACCTCACCACTTGGACAATCATGACTTGGCTCCTCTTCCCGATCAAATAGAATTACCTCAACTCTTTAACCATGAAAATTTCATTCCTCACTTCGCTCAACTTTATAGCTCGGATATATTCCATCAAGACTTGCCTAACAACTTTGACTTTAATTTTTTTGACCCAAAAACCTGGAAGTAG 633 0.3949 MTPHLKQESTAASQRTKCVHWTEDEHRLFLLGLKRFGKGKWKDIAKKVLLTKTKTQIASHAQKFFLHKSSAKKRKSIHDLTLDDDANFKYDQQNREITGSPGNNLVQYSIDEHSPNEQLQEEPSPPFEAYSVLQHFEQQQQSEAPSAVQQLPHHLDNHDLAPLPDQIELPQLFNHENFIPHFAQLYSSDIFHQDLPNNFDFNFFDPKTWK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00050 210 PANTHER TRANSCRIPTION FACTOR KUA1 7 149 - -
Cca05g00050 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 69 IPR017930 -
Cca05g00050 210 ProSiteProfiles Myb-like domain profile. 21 65 IPR001005 -
Cca05g00050 210 Gene3D - 19 69 - -
Cca05g00050 210 PANTHER TRANSCRIPTION FACTOR SRM1 7 149 - -
Cca05g00050 210 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 68 IPR006447 GO:0003677
Cca05g00050 210 SUPERFAMILY Homeodomain-like 15 69 IPR009057 -
Cca05g00050 210 SMART sant 17 67 IPR001005 -
Cca05g00050 210 CDD SANT 21 65 IPR001005 -
Cca05g00050 210 Pfam Myb-like DNA-binding domain 20 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00050 Cca-Chr5 1181505 1182383 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca05g00050 Myb_DNA-binding 1.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00050 - - gmx:102664863 100.138