Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00048 ATGAGTTGGAATAGAATTTGTCTTTTTTGGTATAATGTGGTCAAAGTTACGTGGCGACGTGCAAAGAATCCAAAGGCGCAGCGTGGAAAACGAACCAAAAACCACAGGCGGAATTGTAGTAGAGTTAAACAGCGCGCAGAAAAAAGCGAGAATTCCCACCATGCATGGCCATTCGATTTCGATGTTGGCGCAGACAACCGATACCGTGCGCAACGTGCCATGTCTAGCACCGCTGGTCAAACCATAAAGTGCAAAGCTGCGGTTTCATGGGAGGCAGGGAAGCCACTGGTGATTGACGAAGTAGAGGTGGCGCCACCACAAGCCGGTGAAGTCCGTCTCAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAGACTCCATTGTTTCCTCGCATTTTTGGCCATGAAGCTTCAGGGATTGTGGAGAGTGTAGGCGAGGGTGTAACTCATTTGGAACCAGGAGACCATGCCCTCCCTGTGTTCACAGGAGAGTGCGGGGAGTGTGTACATTGTAAGTCAGAAGAGAGCAACATGTGTGAGCTACTCAGGATCAACACTGATAGAGGTGTCATGATTAATGATGGGAAATCAAGGTTCTCTAAGGATGGACAACCGATACACCATTTCTTGGGAACCTCTACTTTCAGTGAATACACTGTTATCCATGCTGGATGTGTTGCAAAGATCAACCCTGATGCTCCACTTGACAAAGTTTGTGTTCTCAGTTGCGGAATTTGCACAGGTCTTGGTGCTACTGTAAATGTAGCAAAACCAAAACCTGGTTCCTCTGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCGGCTGCTGAAGGGGCAAGGATTTCAGGTGCTTCAAGAATCATTGGAATTGATTTAGTTTCAGCCAGATTTGAACAAGCTAAGAAGTTTGGGGTTAATGAGTTTGTGAACCCAAAAGAACATGATAAACCAGTACAACAGGTAATTGCTGAAATGACCAATGGAGGTGTGGATCGCGCTGTTGAATGCACCGGCAGCATCCAAGCCATGATCTCAGCATTTGAATGTGTCCATGATGGTTGGGGTCTTGCTGTACTTGTTGGTGTGCCTAGTAAAGATGATGCATTCAAAACTGCTCCTATTAATTTCCTGAACGAGAGGACTCTTAAGGGTACCTTTTATGGTAACTACAAACCACGCACTGATCTTCCATCTGTTGTGGAACAGTACATGAGGGGGGAGCTAGAAGAGAGTCCATTAGGTGTCTCATCCGCATGCAAGAGTAACACCTATGAAATTGGTCATGACTCTGTTCGAGGAAAAAGAAGTGGCCACAAAATGTCTTTACAAGAATTCAAGATGGCTGGTAGTACTAGGAAGGAGGAAAATACAATGCCACTGGAGCTTGCAATCCAGAGGGAACTGGAATATAGGAGAATTGTAGCATCATTTCACTTGTCCCCAAATACAAATTTCACTAAAGAGGTTAAATCATCAAATGATGTTTCTTACCCAAAGCTATTTCCAAGTCCAAGTTCAAGGAATTTTTCAACAAAGCGAAAAGAACCACCAACAAAAAGTACTCATCATCAACATCTAAAACTTCAACAACCATTTCATGGAAGTCTCAATCACAAAAGAGTTTGGGACTTCAATCTTGATGTTAAATCGTCAAAAAATGCTTCCAATCAATCCCACTCAAAACCTTTTCCAGGTCCAAGTTCAAGTAAATTTTCTTTAGGAACCAGGGTGAAGGAATCAGTATCACCAACAAGAAGTGTTCATCCAAATCTGCTACATCAACAACCATTTCATGGAAGGCCCAATCATAAAACTAGGAGAGATGATTTATACTGCAAAACCTGCCAGATATTTTGCTCAAGTCCATTCAATCTCAAGCAACACTTCAATGGTCACAAGCATAATCGGAAGGTGGGGAGGCTCCAAATACGCCTAAATGGTGTGAACTATGCACATTATGGTGCTGTGATGAGTTTGCCTTCAAGCAACACCTTGAAGGTAAAAAGCACATCCTTAAATTGCATGCTATGA 2058 0.4368 MSWNRICLFWYNVVKVTWRRAKNPKAQRGKRTKNHRRNCSRVKQRAEKSENSHHAWPFDFDVGADNRYRAQRAMSSTAGQTIKCKAAVSWEAGKPLVIDEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEASGIVESVGEGVTHLEPGDHALPVFTGECGECVHCKSEESNMCELLRINTDRGVMINDGKSRFSKDGQPIHHFLGTSTFSEYTVIHAGCVAKINPDAPLDKVCVLSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGIDLVSARFEQAKKFGVNEFVNPKEHDKPVQQVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGLAVLVGVPSKDDAFKTAPINFLNERTLKGTFYGNYKPRTDLPSVVEQYMRGELEESPLGVSSACKSNTYEIGHDSVRGKRSGHKMSLQEFKMAGSTRKEENTMPLELAIQRELEYRRIVASFHLSPNTNFTKEVKSSNDVSYPKLFPSPSSRNFSTKRKEPPTKSTHHQHLKLQQPFHGSLNHKRVWDFNLDVKSSKNASNQSHSKPFPGPSSSKFSLGTRVKESVSPTRSVHPNLLHQQPFHGRPNHKTRRDDLYCKTCQIFCSSPFNLKQHFNGHKHNRKVGRLQIRLNGVNYAHYGAVMSLPSSNTLKVKSTSLNCML 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00048 685 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 242 416 IPR036291 -
Cca05g00048 685 Pfam Zinc-finger of C2H2 type 619 643 - -
Cca05g00048 685 PANTHER ALCOHOL DEHYDROGENASE-RELATED 77 419 - -
Cca05g00048 685 Gene3D Classic Zinc Finger 609 654 - -
Cca05g00048 685 PANTHER ALCOHOL DEHYDROGENASE 77 419 - -
Cca05g00048 685 Pfam Zinc-binding dehydrogenase 279 403 IPR013149 -
Cca05g00048 685 CDD alcohol_DH_plants 82 418 - -
Cca05g00048 685 MobiDBLite consensus disorder prediction 22 52 - -
Cca05g00048 685 Pfam Alcohol dehydrogenase GroES-like domain 109 236 IPR013154 -
Cca05g00048 685 MobiDBLite consensus disorder prediction 22 42 - -
Cca05g00048 685 MobiDBLite consensus disorder prediction 493 541 - -
Cca05g00048 685 Gene3D - 256 394 - -
Cca05g00048 685 MobiDBLite consensus disorder prediction 560 600 - -
Cca05g00048 685 MobiDBLite consensus disorder prediction 493 520 - -
Cca05g00048 685 SUPERFAMILY beta-beta-alpha zinc fingers 608 650 IPR036236 -
Cca05g00048 685 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 142 156 IPR002328 GO:0008270|GO:0016491
Cca05g00048 685 Gene3D - 93 418 - -
Cca05g00048 685 MobiDBLite consensus disorder prediction 560 614 - -
Cca05g00048 685 SUPERFAMILY GroES-like 77 260 IPR011032 -
Cca05g00048 685 SMART ZnF_U1_5 616 650 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00048 Cca-Chr5 1141266 1146879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00048 110 400 Monolignol Biosynthesis Gene Families AT1G72680 26.280 4.52e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00048 K18857 - gmx:100800668 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00048 05 1141266 1146879 Cca05g00048 05 1141266 1146879 ECH